Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D16
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    26   2.2  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   2.2  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    24   6.8  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    24   9.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   9.0  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    24   9.0  

>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 275 AIALMLSTVMWVSTQQPQEVHTYCGRHLARTMADLCWEEGVDK 147
           AIAL+    +++ T + ++V T  G HL+R +  +  + G  K
Sbjct: 155 AIALLRLDDLYIDTFEIKDVKTLQGDHLSRAIGRIAGQGGKTK 197


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +1

Query: 166 QHRSAIVRAKWRPQYVCTSCGCCVDTHITVDNINAIARSIF 288
           + R  ++  K R  ++C  C C  D  +T+     + R  F
Sbjct: 3   KERPGVLFNKIRSYFICPGCNCLPDWPVTLPCGGTVCRKCF 43


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -2

Query: 245 WVSTQQPQEVHTYCGRHLARTMADLCWEEGVDKRSDAQCASY 120
           W+  +QP +++++     A  +AD   E+ V     A+ A++
Sbjct: 254 WLGNEQPYDLNSWAESETALQLADTLGEDDVIVEGYAEYATW 295


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 211 VCTSCGCCVDTHITVDNINAIARSIFMFGD 300
           +CT C    D  ITV + +A  R+ ++F D
Sbjct: 271 LCTQCPNLFDCVITVGDDSAALRASWLFQD 300


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 303  KCVSEDVSLMPQMKCECIGRPNSF 374
            KC+S   S + Q+KC+ +  P  F
Sbjct: 1123 KCLSSVASRINQIKCDWVTDPEKF 1146


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = -2

Query: 365 RPADTFTFHLWHQRDVLRNTL*SPNMKILLAIALMLSTVMWVSTQQPQEVHTYCGRHLAR 186
           RP   F     H+  +   ++ SP++   +   L  S+ +   T + Q  H Y  R +  
Sbjct: 92  RPLHLFQTSECHEL-IQEESVKSPSITKEVEACLPKSSFLTKPTSEKQTKHVYIRRKIYD 150

Query: 185 TMADLCWEE 159
           +   LC EE
Sbjct: 151 SQHQLCIEE 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,502,275
Number of Sequences: 5004
Number of extensions: 25822
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)