Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D16
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0665 + 5001599-5003149                                           35   0.024
08_02_0948 + 22917130-22917166,22917319-22917923                       29   1.6  
05_01_0429 + 3399266-3399708,3401320-3401382,3403919-3404345,340...    29   1.6  
02_02_0486 - 10856842-10858104                                         28   2.1  
08_02_1072 + 24114656-24114997,24115100-24115333,24115487-241155...    27   4.8  
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811           27   4.8  
07_01_0013 - 99952-100413,100534-100704                                27   4.8  
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982...    26   8.4  
02_05_0377 + 28408751-28409113,28409545-28410129,28411212-28411385     26   8.4  

>07_01_0665 + 5001599-5003149
          Length = 516

 Score = 34.7 bits (76), Expect = 0.024
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = -2

Query: 299 SPNMKILLAIALMLSTVMWVSTQQPQEVHTYCGRHLAR 186
           S N  I+L++A +L TV+W S Q  Q +H   GRHLAR
Sbjct: 12  SVNSGIVLSLAAVLWTVVWNSLQSLQ-LHHLVGRHLAR 48


>08_02_0948 + 22917130-22917166,22917319-22917923
          Length = 213

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +1

Query: 31  PSARPRC-RVCSSTHPRLP 84
           P+ RPRC RV SS+ PRLP
Sbjct: 91  PAVRPRCRRVASSSLPRLP 109


>05_01_0429 +
           3399266-3399708,3401320-3401382,3403919-3404345,
           3404863-3405141
          Length = 403

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 111 RGAVARALSIAALIHAFFPA*VGHSAS*VAP 203
           RGAVAR ++ A   H FF   VGH     AP
Sbjct: 46  RGAVARQVATACAAHGFFRC-VGHGVPAAAP 75


>02_02_0486 - 10856842-10858104
          Length = 420

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 64  STHPRLPRPAESGISH--AEP*LAH*ASLRLSTPSSQHRSAIVRAKW 198
           +T P  P PA S  S   A+  L     LRL+ P++  R+A+V ++W
Sbjct: 5   ATRPSSPPPAASAASSVLADDDLLREILLRLAFPTTLVRAALVSSRW 51


>08_02_1072 +
           24114656-24114997,24115100-24115333,24115487-24115552,
           24115661-24115729,24115826-24115903,24116025-24116219,
           24116551-24116664
          Length = 365

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 182 MADLCWEEGVDKRSDAQCASYGSAWLMPDSAGRGRRG 72
           M  L W   V   + A  A+ G+ +L+P +A RG  G
Sbjct: 51  MDSLAWSSTVSPSTGAATAASGAGFLLPPAAVRGGFG 87


>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
          Length = 359

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 31  PSARPRCRVCSSTHPRLPRPAESGISH 111
           P+  P C   +S H  LP PA  G  H
Sbjct: 131 PNNPPPCSTATSDHHHLPPPAFGGADH 157


>07_01_0013 - 99952-100413,100534-100704
          Length = 210

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 34  SARPRCRVCSSTHPRLPRPAESGISHAEP*LAH*ASLRLSTPS 162
           S+ P CR CS+TH  LP+ +   +  +     H   L  S PS
Sbjct: 114 SSVPPCRPCSATHAGLPQSSSPLMPASRCHCRHPLHLSPSVPS 156


>10_06_0029 +
           9822216-9823124,9825210-9825329,9826188-9826304,
           9826387-9826476,9826706-9826756
          Length = 428

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 10  TSWSHSPPSARPRCRVCSSTHPRLPRPAESGISH 111
           T    +PPS   + R    T+ RL R  ESG+ H
Sbjct: 189 TDTDAAPPSIPTQTRFWQETNSRLRRLPESGLPH 222


>02_05_0377 + 28408751-28409113,28409545-28410129,28411212-28411385
          Length = 373

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 223 CGCCVDTHITVDNINAIARSIFMFGD*SVF 312
           C  C DT +  D  NA A + F+F + + F
Sbjct: 9   CAPCSDTALIYDTFNASAAASFLFDNAAAF 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,051,959
Number of Sequences: 37544
Number of extensions: 214678
Number of successful extensions: 726
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)