Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D16
         (375 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_58515| Best HMM Match : DUF548 (HMM E-Value=0.28)                   27   5.0  
SB_4223| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.0  
SB_20112| Best HMM Match : EGF (HMM E-Value=0)                         26   8.7  
SB_18459| Best HMM Match : Toxin_18 (HMM E-Value=2.1)                  26   8.7  
SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 175 SAIVRAKWRPQ--YVCTSCGCCVDTHITVDNI 264
           S++ R KWRPQ  Y   SC   VD  I V +I
Sbjct: 465 SSVSRIKWRPQKKYQIASCALLVDFDIHVWDI 496


>SB_58515| Best HMM Match : DUF548 (HMM E-Value=0.28)
          Length = 261

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 41  VHAAGSAPALIHVC 82
           VHA G+APA +HVC
Sbjct: 243 VHAEGAAPAPLHVC 256


>SB_4223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 41  VHAAGSAPALIHVC 82
           VHA G+APA +HVC
Sbjct: 196 VHAEGAAPAPLHVC 209


>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2112

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 127 RATAPRG*CPTRQDAADVDECWSRPCS 47
           + T P G   +R +  DVDEC S PCS
Sbjct: 896 KCTCPLGFSGSRCEV-DVDECASSPCS 921


>SB_18459| Best HMM Match : Toxin_18 (HMM E-Value=2.1)
          Length = 150

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 151 STPSSQHRSAIVRAKWRPQYV 213
           S P++ HR  I+R  WR Q++
Sbjct: 51  SNPTTLHRCRILREDWRSQHI 71


>SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 123 LRLRVADARLGRTRQTWMSAGADPAAW 43
           LRL+VA+  LGR  +TW     D  A+
Sbjct: 143 LRLKVAELPLGRISKTWNLKAEDMVAF 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,372,046
Number of Sequences: 59808
Number of extensions: 240102
Number of successful extensions: 815
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)