Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D16
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.29 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   2.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   3.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   6.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   6.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    20   8.3  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.29
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +1

Query: 70  HPRLPRPAESGISHAEP*LAH*ASLRLSTPSSQHRSAIVRAKWRPQYV--CTSCGCCVDT 243
           H  + RP E+ ++   P +     + L++P  +       A   P  +  CT+CG    T
Sbjct: 363 HNVVYRPGENPVTQRLPAVLSRIGIILASPLKREGGPPTGATTGPNEIVTCTNCGPNPCT 422

Query: 244 HITVDNINAIAR 279
           H T +   A  R
Sbjct: 423 HTTTNGCTAELR 434


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 22 HSPPSARPRCRVCSSTHPRL 81
          H+ PS  P C +C   +  L
Sbjct: 26 HTRPSKEPICNICKRVYSSL 45


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 208 YVCTSCGCCVDTHITV 255
           Y C  CG C D   TV
Sbjct: 73  YTCPICGACGDIAHTV 88


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 214 CTSCGCCVDTHITVDNINAIAR 279
           CT+CG    TH T +   A  R
Sbjct: 427 CTNCGPNPCTHTTTNGCTAELR 448


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 214 CTSCGCCVDTHITVDNINAIAR 279
           CT+CG    TH T +   A  R
Sbjct: 447 CTNCGPNPCTHTTTNGCTAELR 468


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 214 CTSCGCCVDTHITVDNINAIAR 279
           CT+CG    TH T +   A  R
Sbjct: 396 CTNCGPNPCTHTTTNGCTAELR 417


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 70  HPRLPRPAESGISHAEP 120
           HPRL R AE   S AEP
Sbjct: 85  HPRLRREAE---SEAEP 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,680
Number of Sequences: 438
Number of extensions: 1931
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)