Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D16
         (375 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    31   0.25 
At3g44716.1 68416.m04812 hypothetical protein                          29   1.3  
At2g46850.1 68415.m05846 expressed protein                             27   3.1  
At5g39230.1 68418.m04751 transcription initiation factor-related...    27   5.4  
At5g24690.1 68418.m02918 expressed protein                             27   5.4  
At4g02030.1 68417.m00273 expressed protein                             27   5.4  
At5g47860.1 68418.m05913 expressed protein                             26   9.4  
At4g30935.1 68417.m04392 WRKY family transcription factor contai...    26   9.4  

>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 27/94 (28%), Positives = 41/94 (43%)
 Frame = +1

Query: 4   LVTSWSHSPPSARPRCRVCSSTHPRLPRPAESGISHAEP*LAH*ASLRLSTPSSQHRSAI 183
           L  S S SPPS+ P     SS  P  P P    +S + P     +S  LS+ S    S+ 
Sbjct: 81  LSPSLSPSPPSSSPSSAPPSSLSPSSPPPL--SLSPSSPPPPPPSSSPLSSLSPSSSSST 138

Query: 184 VRAKWRPQYVCTSCGCCVDTHITVDNINAIARSI 285
              +    Y+ TSC   +   I  ++++  A +I
Sbjct: 139 YSNQTNLDYIKTSCNITLYKTICYNSLSPYASTI 172


>At3g44716.1 68416.m04812 hypothetical protein
          Length = 111

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 287 KILLAIALMLSTVMWVSTQQPQEVHTYCGRHLARTMADL 171
           KI+L + L  S ++  STQ PQE   YCG  L    ++L
Sbjct: 7   KIVLLL-LFFSLILPPSTQNPQEEIYYCGNTLISNPSEL 44


>At2g46850.1 68415.m05846 expressed protein 
          Length = 633

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 167 WEEGVDKRSDAQCASYG-SAWLMPDSAGRGRRG*VLEQTLQR 45
           W  G D    ++    G S+WL+P    RG+RG  LE  + R
Sbjct: 175 WRVGDDFSVFSRYGCRGFSSWLVPRGTNRGKRGVKLEWAIPR 216


>At5g39230.1 68418.m04751 transcription initiation factor-related
           contains weak similarity to Transcription initiation
           factor IIB (General transcription factor TFIIB)
           (Swiss-Prot:Q8W0W3) [Oryza sativa]
          Length = 119

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 211 VCTSCGCCVDTHITVDNIN 267
           +CT CG  +D+H  VD+ +
Sbjct: 25  ICTECGLILDSHYIVDSFD 43


>At5g24690.1 68418.m02918 expressed protein
          Length = 521

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 117 LRVADARLG-RTRQTWMSAGADPAA 46
           LR+ + +LG ++RQ W+   ADP A
Sbjct: 429 LRIMNVQLGEKSRQVWLGVEADPLA 453


>At4g02030.1 68417.m00273 expressed protein
          Length = 694

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -2

Query: 344 FHLWHQRDVLRNTL*SPNMKILLAIALMLSTVMWVSTQQPQEVHTY 207
           FH   ++ +L++ + +   K+ + +     T  WV  ++P+EVH Y
Sbjct: 464 FHAASEK-LLQHYIDTRTQKVSVLLRKRFKTPNWVKHKEPREVHMY 508


>At5g47860.1 68418.m05913 expressed protein
          Length = 431

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 28 PPSARPRCRVCSSTHPRLPRPA 93
          PPS  PR R CS +H R   P+
Sbjct: 9  PPSFSPRRRFCSFSHNRRSLPS 30


>At4g30935.1 68417.m04392 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 466

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +1

Query: 199 RPQYVCTSCGCCVDTHI--TVDNINAI 273
           R  Y CTS GC V  HI   V+N  A+
Sbjct: 351 RNYYRCTSAGCPVRKHIETAVENTKAV 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,232,840
Number of Sequences: 28952
Number of extensions: 149925
Number of successful extensions: 446
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)