Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D15
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    27   1.6  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   2.9  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   3.8  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   5.0  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    25   6.6  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.8  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   8.8  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   8.8  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   8.8  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 199 LVSSVAGLCPEVVYGWGRWWCWS 267
           L S +A   P ++Y WGR + WS
Sbjct: 217 LYSMMATSLPAIIYSWGRNFMWS 239


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 491 YRRVSVASRKTIRILRTLQTHPTKNHPPILIHSSFISRKKW 369
           YR+  V +R   ++LR +   P    P +  HSSF  R++W
Sbjct: 306 YRQDRVENRIQTQVLRHVDVDP----PIVEEHSSFFRRRRW 342


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 384 DKRAVNQDRW-VVFRWMCLEGPEYP 455
           D   +++D W ++ RW  L+GPE+P
Sbjct: 124 DFTIISRDVWDLLVRWYGLKGPEFP 148


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 268 ESRRPFQLSPPRRHGLAQTP 327
           ES  PF +  P+R G  QTP
Sbjct: 481 ESNNPFPVMQPQRTGFGQTP 500


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 136 FKLTLAIIIALYFNDVRFF 192
           F LTLAIII   FND+  F
Sbjct: 394 FALTLAIIILFAFNDLVIF 412


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 160 IALYFNDVRFFVILVSSVAGLCPEVVYGWGRWWCWSE 270
           ++L+F D   + IL+S++  L      G   W  W E
Sbjct: 569 LSLFFLDTYLWYILISTIYSLAYAFCLGISVWTPWRE 605


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 248  PHPYTTSGHSPATELTNITKNLTSLKYKAIMIANVSLKDEIN 123
            P   T    + +T L ++   L SL  + I I NVS KD++N
Sbjct: 1653 PDTQTVMTDAKSTTLASLLL-LASLHNRRIHITNVSSKDDLN 1693


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 277 RPFQLSPPRRHGLAQTPQFGQQRQIQLTQA 366
           R  +L+P +R  L Q  Q  QQRQ Q  Q+
Sbjct: 136 RNMKLTPQQRQFLLQQSQIQQQRQQQQQQS 165


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +1

Query: 106 K*QSALFISSFKLTLAIIIALYFNDVRFFVILVSSVAGLCPEVVYGWGRW 255
           K  S L++ ++ + L  I+      +  FVI++  +    P + Y W  W
Sbjct: 187 KMSSLLYVPAYLVLLLQILGPKKTWMHIFVIIIVQILFSIPFLAYFWSYW 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,118
Number of Sequences: 5004
Number of extensions: 40868
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)