Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D15
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_16070| Best HMM Match : IncA (HMM E-Value=0.43)                     29   2.3  
SB_17593| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)                    27   9.2  

>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 199 LVSSVAGLCPEVVYGWGRWWCWSESRRPFQLSPPRR 306
           L+S   G  P V + W R +C S   RP+  SP  R
Sbjct: 82  LLSLTRGPAPTVTHSWSRPYCHSPVDRPYCYSPVDR 117


>SB_16070| Best HMM Match : IncA (HMM E-Value=0.43)
          Length = 895

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 247 GRWWCW--SESRRPFQLSPPRRHGLAQTPQFGQQRQIQ 354
           GR WC   S S R F+ SPP+R+      Q  QQR ++
Sbjct: 463 GRIWCQPDSHSLRCFERSPPKRYVGVLDQQLVQQRLVE 500


>SB_17593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -3

Query: 269 SDQHHHRPHPYTTSGHSPATELTNITKNLTSLKYKAIMIANVSLKDEINKADCHLCINYV 90
           SDQ   +P+   T G S     T++T    + KYK+I ++N+ +     KA C   +   
Sbjct: 5   SDQDQDKPNHVVTEGPSH----THMTSPQGAHKYKSITLSNLKVIGITGKATCPFMVRLY 60

Query: 89  RNSE 78
            + E
Sbjct: 61  SHYE 64


>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
          Length = 1860

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 266 DQHHHRPHPYTTSGHSPATELTNITKNLTSLKYKAIMIANVSLKDEINKADCHLC 102
           D H    HP TT+     TE         +L++ A ++A+  L ++  KA CH C
Sbjct: 707 DDHDDENHPVTTTCRCEYTE------QAPTLQHCATLLAHTLLINQHIKAICHRC 755


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,044,222
Number of Sequences: 59808
Number of extensions: 337813
Number of successful extensions: 1028
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)