Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D15
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.19 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
 Frame = -3

Query: 257 HHRPHPYTTSGHSPATELTN---ITKNLTSLKYKAIMIANVSLKDE 129
           HH PHP  T G    T L N     +N   +  K I I    LK E
Sbjct: 464 HHHPHPPETPGPQVETILQNACFCARNELMMILKEIKIITDQLKSE 509


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 244 WGRWWCWSESRRPFQL 291
           WG  W W+E R+ + L
Sbjct: 169 WGSAWQWNEERKQYYL 184


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/38 (28%), Positives = 14/38 (36%)
 Frame = -3

Query: 305 RRGGDSWNGRRDSDQHHHRPHPYTTSGHSPATELTNIT 192
           R G  SW G       H      +T+G  P    T +T
Sbjct: 701 RSGSHSWEGDSFKVSKHEEVSRTSTAGQFPTNVATTVT 738


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 503  ACPHYRRVSVASRKTIRILRTLQTHPTKNHP 411
            A PH  ++++ +  T  +   ++ HPT N P
Sbjct: 1365 APPHSPQITLTATTTNSLTMKVRPHPTDNAP 1395


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 311 PWRRGGDSWNGR 276
           PWR  G+ WN R
Sbjct: 135 PWRTCGNPWNTR 146


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 311 PWRRGGDSWNGR 276
           PWR  G+ WN R
Sbjct: 188 PWRTCGNPWNTR 199


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 221 SPATELTNITKNLTSL 174
           S A+ +TN+T NLT++
Sbjct: 951 SSASNVTNVTTNLTTI 966


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +1

Query: 469 EATETLR*WGQALQRHCADRPELFT*RMFHLLL-NFQSCLHIGHCC*G 609
           +AT +L    +    HC    E +    FH  + N QS  H   CC G
Sbjct: 767 KATTSLEAEKREKSEHCEKGKEYYA-ASFHTDIGNSQSLAHQDQCCPG 813


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,093
Number of Sequences: 438
Number of extensions: 2690
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)