Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D15
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26850.1 68418.m03203 expressed protein                             29   3.3  
At2g44410.1 68415.m05523 expressed protein                             27   7.5  
At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot...    27   7.5  
At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 / am...    27   10.0 
At1g34300.1 68414.m04256 lectin protein kinase family protein co...    27   10.0 

>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 389 FISRKKWPACVSWICRCCP 333
           FISR  +PAC S +C CCP
Sbjct: 3   FISRNVFPACES-MCICCP 20


>At2g44410.1 68415.m05523 expressed protein 
          Length = 413

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 299 GGDSWNGRRDSDQHHHRPHP 240
           GGD+  G++   QHHH  HP
Sbjct: 260 GGDN-GGQQQQQQHHHHHHP 278


>At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein
           similar to SP|P22138 DNA-directed RNA polymerase I 135
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit
           2) {Saccharomyces cerevisiae}; contains Pfam profiles
           PF04563; RNA polymerase beta subunit, PF04560: RNA
           polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2
           domain 2, PF04565: RNA polymerase Rpb2 domain 3,
           PF00562: RNA polymerase Rpb2 domain 6
          Length = 1114

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 428 PTKNHPPILIHSSFISRKKWPACVSWICRC 339
           P +NHP  +I +SF  RK+  +  + + RC
Sbjct: 122 PKRNHPTSMIRNSFRDRKEGYSSKAVVTRC 151


>At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 /
           aminophospholipid flippase 1 / magnesium-ATPase 1 (ALA1)
           nearly identical to SP|P98204 Phospholipid-transporting
           ATPase 1 (EC 3.6.3.1) (Aminophospholipid flippase 1)
           {Arabidopsis thaliana}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1158

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 318 SDSTIRTTATDPT-DAGW-PFLS*DKRAVNQDRWVVFRWMCLEGPEYPDRLP 467
           SDS+ +  A +   D G   +L  DK     D  + F+  C+EG +Y DR P
Sbjct: 433 SDSSFQCRALNINEDLGQIKYLFSDKTGTLTDNKMEFQCACIEGVDYSDREP 484


>At1g34300.1 68414.m04256 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 829

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 181 VRFFVILVSSVAGLCPEVVYGWGRWWC 261
           V  +++ V+ +AGL   V    G WWC
Sbjct: 420 VHLWIVAVAVIAGLLGLVAVEIGLWWC 446


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,672,359
Number of Sequences: 28952
Number of extensions: 219390
Number of successful extensions: 656
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)