Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_D14
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 117 2e-27
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 116 4e-27
07_03_1237 + 25073010-25073513 29 0.70
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 2.1
07_01_0385 - 2871628-2872131 27 2.1
02_01_0679 - 5048653-5051394 27 2.8
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 4.9
01_06_1842 - 40278875-40280131 26 4.9
11_02_0018 - 7412309-7413328 26 6.5
11_02_0016 - 7380933-7382027 26 6.5
01_01_0410 - 3090744-3091022,3091100-3091630 26 6.5
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 25 8.6
06_03_0075 - 16253719-16253841,16255076-16255195,16255752-162558... 25 8.6
03_06_0272 - 32775620-32776501 25 8.6
02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776 25 8.6
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 117 bits (282), Expect = 2e-27
Identities = 50/81 (61%), Positives = 62/81 (76%)
Frame = -2
Query: 247 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWXCKR 68
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 67 CKRTVAGGAWGFSTTAAAAMQ 5
C + AGGA+ +T +A ++
Sbjct: 85 CGKVKAGGAYTMNTASAVTVR 105
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 116 bits (279), Expect = 4e-27
Identities = 50/78 (64%), Positives = 60/78 (76%)
Frame = -2
Query: 238 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWXCKRCKR 59
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92
Query: 58 TVAGGAWGFSTTAAAAMQ 5
AGGA+ +T +A ++
Sbjct: 93 VKAGGAYTMNTASAVTVR 110
>07_03_1237 + 25073010-25073513
Length = 167
Score = 29.1 bits (62), Expect = 0.70
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 103 KRSCVGIWXCKRCKRTVAGGAWGFSTTAAAA 11
KR G+ C C RT++GG++G+ AA
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAA 52
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 157 EVTQHAKYTCSFCGKDAM 104
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 136 YTCSFCGKDAMKRSCVGIWXCKRCKRTVAGGAW 38
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>02_01_0679 - 5048653-5051394
Length = 913
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = -3
Query: 297 EFGRPMLCQLLYRRGLPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 154
E G + ++L LP VPK LELLA++ + V L V+W + WK
Sbjct: 849 EEGAIIRLEVLLLLSLPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 279 LCQLLYRRGLPKWP 238
+C LY+R PKWP
Sbjct: 768 VCMSLYKRAYPKWP 781
>01_06_1842 - 40278875-40280131
Length = 418
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 3 SCIAAAAVVENPQAPPATVLLHRL 74
+C AAAA P PAT +L RL
Sbjct: 268 ACAAAAAAATAPAPAPATSMLRRL 291
>11_02_0018 - 7412309-7413328
Length = 339
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 12 AAAAVVENPQAPPATVLLHRLQXQMPTQERFIASL 116
A AA +++P PPATV++ Q R+ +L
Sbjct: 259 AGAAGIDSPAFPPATVVIGGYDPLQDWQRRYCETL 293
>11_02_0016 - 7380933-7382027
Length = 364
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 12 AAAAVVENPQAPPATVLLHRLQXQMPTQERFIASL 116
A AA +++P PPATV++ Q R+ +L
Sbjct: 264 AGAAGIDSPAFPPATVVIGGYDPLQDWQRRYCETL 298
>01_01_0410 - 3090744-3091022,3091100-3091630
Length = 269
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 12 AAAAVVENPQAPPATVLLHRL 74
+AA+ NP APP LHRL
Sbjct: 44 SAASAATNPAAPPDDAELHRL 64
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 25.4 bits (53), Expect = 8.6
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Frame = -2
Query: 274 STFVSERFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKR 98
S + RF ++V K G Y L K AKYT G A R
Sbjct: 60 SDMMKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDR 119
Query: 97 SCVGIWXCKRCKRTV 53
S G CK ++ V
Sbjct: 120 SSAGAVSCKLREKNV 134
>06_03_0075 -
16253719-16253841,16255076-16255195,16255752-16255895,
16256323-16256529,16256832-16256876,16257262-16257313,
16259756-16259831,16260785-16260893,16260992-16261183
Length = 355
Score = 25.4 bits (53), Expect = 8.6
Identities = 25/86 (29%), Positives = 35/86 (40%)
Frame = -2
Query: 289 PADALSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKD 110
P +L +++RFT A R KVG+ K Y RK ++ + S K
Sbjct: 36 PDGSLIQSLADRFTASAARAGKVGVRSKQ-VWYWFQNRKYSQRSRNSTKMLPAASGDHKS 94
Query: 109 AMKRSCVGIWXCKRCKRTVAGGAWGF 32
A RS V K K ++ GG F
Sbjct: 95 AFARSSVQ----KSVKNSLEGGQLEF 116
>03_06_0272 - 32775620-32776501
Length = 293
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +3
Query: 12 AAAAVVENPQAPPATVL-LHRLQXQMPTQERFIASLPQNEQVY 137
AAAAVV P A + LH L MP +A L Q Y
Sbjct: 117 AAAAVVSEPAWVRAELFPLHGLPMDMPPLRFIVAKLLQRSDFY 159
>02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776
Length = 80
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -2
Query: 277 LSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAK 137
L ++ + + K + G+T + +RY LR+ ++K+EV K
Sbjct: 13 LEVYMLTIYLLLHKNQVRHGVTARRTSRYYVVLRRELRKLEVVGKVK 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,303,685
Number of Sequences: 37544
Number of extensions: 187498
Number of successful extensions: 473
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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