Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D14
         (302 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.10 
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.95 
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.95 
SB_12488| Best HMM Match : PAN (HMM E-Value=0.0087)                    28   1.3  
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                28   1.3  
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.2  
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      27   2.2  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       27   2.9  
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)                26   5.1  
SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)                      26   5.1  
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   6.7  
SB_39407| Best HMM Match : TIG (HMM E-Value=0)                         26   6.7  
SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.9  
SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.9  

>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 277 LSTFVSERFTKMAKR---TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 128
           +ST  S  + K+  R   T+  GIT    T Y +S +K+V +   T+ A  TC
Sbjct: 1   MSTHYSSPYKKLVPRQLTTRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITC 53



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 277 LSTFVSERFTKMAKR---TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 128
           +ST  S  + K+  R   T+   IT    T Y +S +K+V +   T+ +  TC
Sbjct: 28  MSTHYSSSYKKLVPRQLTTRWASITCMMSTHYSSSYKKLVPRSLTTRWSGITC 80


>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = +3

Query: 24  VVENPQAPPATVLLHRLQXQMPTQERFIASLPQNEQVYFACWVTSIFLTILRRE 185
           V   P +    +L+         +++  AS  + E  ++ CWV S F+T  + +
Sbjct: 144 VTNKPSSASRGLLVLLFSQAAALRKKIAASCWEKESEFYECWVASFFITTAKTQ 197


>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 257 EVYQNGQTYQKGWNYWQIWHTLRCL 183
           + YQ     + GW  WQIW  LR +
Sbjct: 644 DTYQGRPLMKYGWLKWQIWRALRLI 668


>SB_12488| Best HMM Match : PAN (HMM E-Value=0.0087)
          Length = 124

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 299 MNSAGRCSVNFCIGEVYQNGQ-TYQKGWNY 213
           M+S G C +N C   VYQ  Q   Q+GW Y
Sbjct: 83  MDSGGTCELNHC-EAVYQKAQGIEQRGWLY 111


>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 190 GASLRKMVKKMEVTQHAKYTCSFCGK 113
           G   +K ++  E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234


>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 111 SLPQNEQVYFACWVTSIFLTIL 176
           S P +  V FA W  SIFLTI+
Sbjct: 133 SAPTSLSVIFAAWFLSIFLTII 154


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 133 TCSFCGKDAMKRS 95
           TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -2

Query: 124 FCGKDAMKRSCVGIWXCKRCKRTVAGGAWGFSTTAAAA 11
           +C        C+  W  KRC +    G +GF+ T   A
Sbjct: 594 YCDHVTGSCECLPGWTGKRCDQACPSGTYGFNCTLPCA 631


>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
          Length = 815

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 257 EVYQNGQTYQKGWNYWQIWHTLRCL 183
           +VY+N    + G   WQIW  LR +
Sbjct: 643 DVYRNEPLQRYGMLKWQIWRALRLI 667


>SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)
          Length = 438

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 40  KLLLLQSSCIAYKXRCRHKNVS*HPYHKMSKYTLRVGL 153
           +++ LQS    YK  C  KNV  HP      Y LR+GL
Sbjct: 110 RVVTLQSDSYPYK--CYIKNVLSHPQESQESY-LRLGL 144


>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 618

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 178 RKMVKKMEVTQHAKYTCSFCGKDAMKRS 95
           R+ VK + + +  KY C  C KD  + S
Sbjct: 410 REQVKDLFIKEGEKYRCRLCSKDFTRLS 437


>SB_39407| Best HMM Match : TIG (HMM E-Value=0)
          Length = 1710

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 265  VSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGK 113
            +S  +TK+  RT+K  I GKY       +++      V     YT S   K
Sbjct: 1245 MSSSYTKIICRTQKSHIPGKYNVSVSVGVQQCACTSHVGCSFAYTTSLTPK 1295


>SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 257 EVYQNGQTYQKGWNYWQIWHTLRCL 183
           +VYQ  +  + G   WQIW  LR +
Sbjct: 558 DVYQVNKLQKFGMLKWQIWRALRLI 582


>SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 106 MKRSCVGIWXCKRCKRTVA 50
           +KR+  G W CK CK+T +
Sbjct: 552 LKRAPKGGWYCKFCKKTTS 570


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,518,581
Number of Sequences: 59808
Number of extensions: 218106
Number of successful extensions: 568
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)