Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_D14
(302 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical ... 129 3e-31
Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.12
Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical pr... 29 0.85
Z72507-1|CAA96633.2| 172|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z72505-1|CAA96608.1| 338|Caenorhabditis elegans Hypothetical pr... 26 4.5
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 26 4.5
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z68493-9|CAA92796.1| 338|Caenorhabditis elegans Hypothetical pr... 26 6.0
AL032639-10|CAA21634.1| 108|Caenorhabditis elegans Hypothetical... 26 6.0
Z71266-9|CAD24483.1| 489|Caenorhabditis elegans Hypothetical pr... 25 7.9
AB040992-1|BAB21560.1| 489|Caenorhabditis elegans CeCRMP/DHP-1 ... 25 7.9
>AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical
protein Y48B6A.2 protein.
Length = 91
Score = 129 bits (312), Expect = 3e-31
Identities = 55/80 (68%), Positives = 65/80 (81%)
Frame = -2
Query: 244 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWXCKRC 65
MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR GIW C +C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60
Query: 64 KRTVAGGAWGFSTTAAAAMQ 5
+ VAGGA+ + T AA ++
Sbjct: 61 HKVVAGGAYVYGTVTAATVR 80
>Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical
protein T13H5.4 protein.
Length = 500
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 278 SVNFCIGEVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLLILW 117
S C + Y+ + +QK +N W+ H +RCL N +N T+ L LW
Sbjct: 406 SCEICGNQTYKGPKAFQKHFNEWRHSHGMRCLGIPN-TSHFANITKIKDALDLW 458
>Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical
protein F35E8.6 protein.
Length = 272
Score = 28.7 bits (61), Expect = 0.85
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 76 CKRCKRTVAGGAWGFSTTAAAA 11
CKRC T A A G +TTAA A
Sbjct: 188 CKRCPATTAAPAAGVTTTAAPA 209
>Z72507-1|CAA96633.2| 172|Caenorhabditis elegans Hypothetical
protein F17C11.1 protein.
Length = 172
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 121 CGKDAMKRSCVGIWXCKRCKRTVAGGAWGFSTTAAA 14
CGK + R+C + +C W F+TTAAA
Sbjct: 69 CGKSPVNRNCTALVPDSKCV-----FKWAFATTAAA 99
>Z72505-1|CAA96608.1| 338|Caenorhabditis elegans Hypothetical
protein C50C10.2 protein.
Length = 338
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 198 VPYLPVIPTFLVRLAILVNLSDTKVDRASAGRIH 299
+P+L ++PT ++ +AILV K SA H
Sbjct: 29 LPFLYILPTTVIMIAILVKYRKAKATLNSATMDH 62
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 26.2 bits (55), Expect = 4.5
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -1
Query: 266 CIGEVYQNGQTYQKGWNYWQIWHTLRCLS-T*NGQKDGSNPTRKVYLLILW*GCYETFLC 90
C ++ NG Y WQ+ C+S + Q +G T +Y C + +C
Sbjct: 1207 CYSGLFINGTAYSSAG--WQVCQG-ECVSVSITSQFNGQAGTAALYT------CDPSRVC 1257
Query: 89 RHLXL*AMQEDCSRRSLGILHYCCRSNA 6
R+L + CS GI CC +NA
Sbjct: 1258 RNLNI---LNKCSSLENGITGCCCNTNA 1282
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 148 QHAKYTCSFCGKDAMKRSCVGIWXCKRC 65
++ KY C+ C R G+W CK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254
>Z68493-9|CAA92796.1| 338|Caenorhabditis elegans Hypothetical
protein C33A12.13 protein.
Length = 338
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 198 VPYLPVIPTFLVRLAILVNLSDTKVDRASAGR 293
+P+L +IPTFLV I + S T ++ G+
Sbjct: 36 IPWLYMIPTFLVIYKIFLIYSKTNWEQLEPGK 67
>AL032639-10|CAA21634.1| 108|Caenorhabditis elegans Hypothetical
protein Y38F1A.9 protein.
Length = 108
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 202 GTRYGASLRKMVKKMEVTQHAK 137
G RY + ++KMV K VT H K
Sbjct: 46 GDRYVSKIKKMVGKFTVTLHIK 67
>Z71266-9|CAD24483.1| 489|Caenorhabditis elegans Hypothetical
protein R06C7.3 protein.
Length = 489
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -1
Query: 275 VNFCIGEVYQNGQTYQKGWNYWQIW 201
++FC + ++NG++ G+N W+ W
Sbjct: 93 IDFCCPD-HRNGESLIAGYNRWRSW 116
>AB040992-1|BAB21560.1| 489|Caenorhabditis elegans CeCRMP/DHP-1
protein.
Length = 489
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -1
Query: 275 VNFCIGEVYQNGQTYQKGWNYWQIW 201
++FC + ++NG++ G+N W+ W
Sbjct: 93 IDFCCPD-HRNGESLIAGYNRWRSW 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,696,333
Number of Sequences: 27780
Number of extensions: 159405
Number of successful extensions: 454
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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