Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_D14
(302 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC) 119 4e-28
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si... 112 5e-26
At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identic... 30 0.26
At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identic... 30 0.26
At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identic... 30 0.26
At3g27350.1 68416.m03420 expressed protein 29 0.79
At4g28730.1 68417.m04109 glutaredoxin family protein contains gl... 27 1.8
At1g42440.1 68414.m04894 expressed protein contains Pfam domain,... 26 4.2
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 26 5.6
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 26 5.6
At3g44940.1 68416.m04842 expressed protein 26 5.6
At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340... 25 7.4
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 25 9.7
At1g19570.1 68414.m02437 dehydroascorbate reductase, putative si... 25 9.7
>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
Length = 92
Score = 119 bits (286), Expect = 4e-28
Identities = 51/80 (63%), Positives = 62/80 (77%)
Frame = -2
Query: 244 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWXCKRC 65
MAKRTKKVGI GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK +KR VGIW CK C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60
Query: 64 KRTVAGGAWGFSTTAAAAMQ 5
+ AGGA+ +T +A ++
Sbjct: 61 GKVKAGGAYTMNTASAVTVR 80
>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
similar to putative 60S ribosomal protein L37a
GB:AAD28753 [Gossypium hirsutum]
Length = 92
Score = 112 bits (269), Expect = 5e-26
Identities = 49/80 (61%), Positives = 59/80 (73%)
Frame = -2
Query: 244 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWXCKRC 65
M KRTKK I GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR VGIW CK C
Sbjct: 1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60
Query: 64 KRTVAGGAWGFSTTAAAAMQ 5
+ AGGA+ +T +A ++
Sbjct: 61 GKVKAGGAYTMNTASAVTVR 80
>At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 545
Score = 30.3 bits (65), Expect = 0.26
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 260 GEVYQNGQTYQKGWNYW 210
G Y +G+TYQ W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277
>At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 428
Score = 30.3 bits (65), Expect = 0.26
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 260 GEVYQNGQTYQKGWNYW 210
G Y +G+TYQ W+YW
Sbjct: 180 GSCYSSGETYQPRWDYW 196
>At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 516
Score = 30.3 bits (65), Expect = 0.26
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 260 GEVYQNGQTYQKGWNYW 210
G Y +G+TYQ W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277
>At3g27350.1 68416.m03420 expressed protein
Length = 274
Score = 28.7 bits (61), Expect = 0.79
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 18 AAVVENPQAPPATVLLHRLQXQMP 89
AA E P PA VLLH L+ Q P
Sbjct: 91 AATEEQPSVTPAEVLLHTLETQPP 114
>At4g28730.1 68417.m04109 glutaredoxin family protein contains
glutaredoxin domain, Pfam:PF00462
Length = 174
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 214 TGKYGTRYGASLRKMVKKMEVTQHAKYTCSFC 119
+ +G+R S+RK V + V ++K CS+C
Sbjct: 62 SSSFGSRMEESIRKTVTENTVVIYSKTWCSYC 93
>At1g42440.1 68414.m04894 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 793
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 282 MLCQLLYRRGLPKWP 238
++C LY+R PKWP
Sbjct: 771 VVCMNLYKRAYPKWP 785
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 39 QAPPATVLLHRLQXQMPTQERF 104
+ PP TVL+ +LQ + + ERF
Sbjct: 802 KVPPMTVLIQKLQNALSSLERF 823
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 39 QAPPATVLLHRLQXQMPTQERF 104
+ PP TVL+ +LQ + + ERF
Sbjct: 875 KVPPMTVLIQKLQNALSSLERF 896
>At3g44940.1 68416.m04842 expressed protein
Length = 250
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 285 PMLCQLLYRRGLPKWPNVPKRLELLANMAHVTVPL 181
P+L LL LP+W + P LE + + VT+PL
Sbjct: 182 PLLQTLLLAGPLPQWRHPPPPLE-TSEIPPVTIPL 215
>At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340:
Protein of unknown function (DUF740)
Length = 521
Score = 25.4 bits (53), Expect = 7.4
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = -1
Query: 248 QNGQTYQKGWNYW 210
++G+ + KGWN+W
Sbjct: 347 KSGKNWSKGWNFW 359
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 205 YGTRYGASLRKMVKKMEVTQH 143
YG R+G+ LR +V E T H
Sbjct: 640 YGRRHGSLLRSIVSDGETTSH 660
>At1g19570.1 68414.m02437 dehydroascorbate reductase, putative
similar to GB:BAA90672 from (Oryza sativa)
Length = 213
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/21 (66%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +2
Query: 194 TCAIFAS-NSNLFGTFGHFGK 253
T A FAS SN+FGTFG F K
Sbjct: 91 TPAEFASVGSNIFGTFGTFLK 111
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,232,232
Number of Sequences: 28952
Number of extensions: 144739
Number of successful extensions: 414
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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