Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D13
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   5.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.8  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 416 QACDAALPGLCLNAVDLSSRSPL*RTHYLCSKYSMLISSFVVLLSPTSQTGDSSTQPL 589
           QA +     LCL A  ++S+SPL      C     L+S  ++ +   S T   +TQ +
Sbjct: 37  QAVNGHCSHLCLPAPRINSKSPL--LSCACPDGLKLLSDGLMCVEKVSTTIVPTTQEI 92


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 669 CWQNHYFIPTTSW 631
           CW N Y+I   +W
Sbjct: 71  CWMNVYYIVILAW 83


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 453 FRHKPGRAASHACPRRTK 400
           F+H+ G  +  ACP  +K
Sbjct: 270 FKHEAGSHSCEACPAHSK 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,808
Number of Sequences: 438
Number of extensions: 4345
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)