Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D11
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    27   4.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.7  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   7.5  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   7.5  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   9.9  

>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 589 PRYNPGAVG*AIAQYCNQKQGYLGSKS*LSNCLHYTQ 699
           P Y+  A   AI+ Y +    Y G+ S + N + Y Q
Sbjct: 139 PAYSSNAPNTAISNYVSSGLSYYGNSSIIMNAVEYNQ 175


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 654  VTLFLVAILRNRSSYCSWVIPRARLG 577
            + + LVA+L + S Y SW++P   LG
Sbjct: 2232 IWIALVALLASLSRYHSWILPILGLG 2257


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 456 LQNRTRISLTMLLDFWVKCPCPGDPWYVVFTSNMLSSTKCV 578
           L++RT  S  +LL  +V      D WY   T  MLSST  +
Sbjct: 180 LKSRTTTS-NLLLSLFVGILFEDDLWYFFNTLYMLSSTSAI 219


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = -3

Query: 712 CIPIFAYSEGSYLVKILILSNLVSGCNIAQSLILLLLGY 596
           C  + A+  G+Y   +  +  L+S CN++  ++  L+ +
Sbjct: 149 CFTLSAFLSGNYKESLEQIQYLISSCNLSPLVVSRLISF 187


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 775 VLNVPSFVLFNGHKIMLIRVRCIPIFAYSEGSYLVKILILSNLVS 641
           V N P F LF+ +    +   C+     SE   L   L LSNL++
Sbjct: 143 VYNKPGFDLFSNYTFCFLGDGCLQEGVSSEACSLAGHLKLSNLIA 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,965
Number of Sequences: 5004
Number of extensions: 64923
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)