Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D11
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0149 - 14452654-14452666,14452943-14454699,14454886-144549...    29   3.4  
06_01_1034 + 8110347-8110943,8111201-8111512,8111841-8112011,811...    29   3.4  
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026     29   6.0  
08_02_0328 - 15831060-15831287                                         28   7.9  

>07_03_0149 -
           14452654-14452666,14452943-14454699,14454886-14454990,
           14455808-14455978,14456309-14456641,14456900-14457492,
           14458864-14458906
          Length = 1004

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = -3

Query: 592 AGEARTHLVEESMLLVKTTYHGSPGHGHFTQKSKSIVRLILVRFCRSSLMTYPDVMPLAS 413
           A + R H +E    LVK      PG         S    +L+ F +S L  YP   PL  
Sbjct: 457 AKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFMLISFIQSFLAKYPSARPLVV 516

Query: 412 VAYG 401
           +  G
Sbjct: 517 LPKG 520


>06_01_1034 +
           8110347-8110943,8111201-8111512,8111841-8112011,
           8112780-8114576
          Length = 958

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = -3

Query: 592 AGEARTHLVEESMLLVKTTYHGSPGHGHFTQKSKSIVRLILVRFCRSSLMTYPDVMPLAS 413
           A + R H +E    LVK      PG         S    +L+ F +S L  YP   PL  
Sbjct: 402 AKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFMLISFIQSFLAKYPSARPLVV 461

Query: 412 VAYG 401
           +  G
Sbjct: 462 LPKG 465


>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
          Length = 961

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
 Frame = +3

Query: 366 TTIAP*PYTATHPYATLASGITSGYVIKLLLQ--NRTRISLTMLLDFWVKCPCPGDPWYV 539
           T+ A  PY  T   AT  SG     ++  +    + T+I  T+ L   V     G P YV
Sbjct: 400 TSGADLPYNTTADNATSFSGYPQTDLLTPIATAGDLTKIQATLNL---VGTLFAGPPPYV 456

Query: 540 VFTSNMLSSTKCVRASPAV*PRSSRMSDCAILQPE 644
              S +  +       PA+   +S +S C IL PE
Sbjct: 457 PLPSALSLADPSYTCPPAINVSTSTLSTCCILTPE 491


>08_02_0328 - 15831060-15831287
          Length = 75

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/62 (29%), Positives = 23/62 (37%)
 Frame = +1

Query: 406 TRRLRAASRQDMSSNYFCKIVQESALQCFWTFG*SARAPGTRGMWSSLATCSLRPNVSEP 585
           TRR R     D      C +  +       + G  ARA G+ G WS   T    P+   P
Sbjct: 4   TRRERGGDPVDRPLGGLCGVEDDGGDGVSGSGGGKARAGGSNGRWSWHPTARFPPHPGVP 63

Query: 586 RP 591
            P
Sbjct: 64  PP 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,815,877
Number of Sequences: 37544
Number of extensions: 462417
Number of successful extensions: 1208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)