Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D11
         (828 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               29   6.1  
SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 193 YKPYNIVVSCLLAAVTGAPTPVGRRPVECSLLF--TTRSVRRNSTW 324
           Y+ Y    SC+ ++VTG P  V    ++C +LF  +  S  R ++W
Sbjct: 721 YRKYFSFSSCMGSSVTGPPLRVALSRIDCRILFYLSISSTMRANSW 766


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 142 CRYVLFTLLHCHIIIICYKPYNIVVSCLL 228
           CR VL+ ++ C +++ C K   +V+ C++
Sbjct: 431 CRVVLYCVVLCRVVLYCVKLCCVVLHCVV 459


>SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 22/76 (28%), Positives = 27/76 (35%)
 Frame = +2

Query: 380 VTLHRNPSIRDACERHHVRICHQTTSAKSYKNQPYNAFGLLGEVPVPRGPVVCGLH*QHA 559
           VT    P  RDA  +        T +AKS     YN  G +     P   V+ G H    
Sbjct: 216 VTYRLGPGFRDASSK-----VQMTVTAKSVTKSIYNVIGTIAGREEPDRYVILGNHRDAW 270

Query: 560 LFDQMCPSLARGITQE 607
           +F    PS    I  E
Sbjct: 271 VFGASDPSSGTAILME 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,148,752
Number of Sequences: 59808
Number of extensions: 511843
Number of successful extensions: 1260
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)