Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D11
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   1.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.0  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 374 SSVTLHRNPSIRDACERHHVRIC 442
           SSVTL+RN +++ +   H +  C
Sbjct: 94  SSVTLYRNKTVKYSARMHAIIAC 116


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -3

Query: 676 LVKILILSNLVSGCNIAQSLILLLLGYTAGEARTHLVEESMLLVKTTYHGSPGHG 512
           ++ +LIL      CN  Q      L Y  GE  T L   ++ +   +  G+ G G
Sbjct: 550 IMTVLILRRASDECNKKQPSDCDTLEYRNGEVTTPLFTPAVGVAAASAGGAGGGG 604


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 341 SAFTRVTIYYNSSVTLHRNPSI 406
           SAF  +T YY+    L+ N ++
Sbjct: 135 SAFVNLTAYYDGGANLNLNGTV 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,765
Number of Sequences: 438
Number of extensions: 5729
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)