Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D11
         (828 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02330.1 68416.m00216 pentatricopeptide (PPR) repeat-containi...    34   0.13 
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    28   6.6  

>At3g02330.1 68416.m00216 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 861

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +1

Query: 169 HCHIIIICYKPYNIVVSCLLAAVTGAPTPVGRRPVECSLLFTTRSVRRNSTWVASVNLGF 348
           H H+II  ++P   V++CLL   T +     R  V  S++F    +R   +W   +N G+
Sbjct: 29  HAHMIISGFRPTTFVLNCLLQVYTNS-----RDFVSASMVFDKMPLRDVVSWNKMIN-GY 82

Query: 349 YASDDLLQ 372
             S+D+ +
Sbjct: 83  SKSNDMFK 90


>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
           similar to SP|P04051 DNA-directed RNA polymerase III
           largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
           contains InterPro accession IPR000722: RNA polymerase,
           alpha subunit
          Length = 1328

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 172 CHIIIICYKPYNIVVSCLL 228
           C ++ I Y+P N++++C+L
Sbjct: 241 CELLYIAYRPENLIITCML 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,981,847
Number of Sequences: 28952
Number of extensions: 348753
Number of successful extensions: 772
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)