Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D10
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   2.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   7.9  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   7.9  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = -3

Query: 457 MINQRMLIERFNYIHNIMKIPHTTILENAGVLLSRVFRIKQRHLFLQSLGRAQYD 293
           +I+Q +L+ +  Y  ++++ P T   +N G+ +S  F   Q+ LF+  +   +YD
Sbjct: 218 LIHQHILVNQRVYAEDVIE-PKTFHYKN-GISISMKFDKDQKKLFINDVSTTKYD 270


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/63 (22%), Positives = 32/63 (50%)
 Frame = -3

Query: 673  NFSTIRIDRRFGFYQQYFDLSGKNVRCLATTQPKLITYNLHHVKCNTFAIKEEMGFKDEE 494
            N  ++ + R+ GF     +L  +    L++  PK++   L+++  +   I  +  F++ E
Sbjct: 986  NIPSLTLRRQIGFLTMTEELLLQISSKLSSVAPKILNAVLYNLVVSDDQISSQEAFENFE 1045

Query: 493  IKM 485
            +KM
Sbjct: 1046 VKM 1048


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/75 (21%), Positives = 32/75 (42%)
 Frame = -3

Query: 442 MLIERFNYIHNIMKIPHTTILENAGVLLSRVFRIKQRHLFLQSLGRAQYDPKKVNYVPIK 263
           ++ + F+Y  N+ K+P T + +       + F + QR   L  +G  + D     YV   
Sbjct: 147 LISDSFSYRLNLSKLPRTPLEKCTVARACKQFPLNQRSPLLDLMGSFERD-----YVNFS 201

Query: 262 ALVEKTDVEFCNNFA 218
              +    + C++ A
Sbjct: 202 NFSQMLSAQLCDSMA 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,126
Number of Sequences: 5004
Number of extensions: 62307
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)