Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_D10
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0253 + 1888831-1889399,1890121-1890526,1890980-1891195,189... 34 0.17
03_06_0608 - 35039319-35039903,35040328-35040387 33 0.29
08_02_1248 - 25581974-25582975 31 1.2
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 30 2.1
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 29 4.8
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 29 4.8
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647... 29 4.8
03_02_0828 - 11592080-11592171,11592288-11592354,11592748-115928... 29 6.3
01_01_1237 - 10047417-10047934,10048899-10049136 28 8.4
>07_01_0253 +
1888831-1889399,1890121-1890526,1890980-1891195,
1891441-1891548,1892085-1892359,1892462-1892714
Length = 608
Score = 33.9 bits (74), Expect = 0.17
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Frame = -3
Query: 805 IFYKDPMIFCEHLEDLKTRVNYLESKRFSDSEIKRIISKNPYWLNFSTIRIDRRFGFYQQ 626
+ K E+L+ + Y+ES I ++ + P LN S ++ R FY
Sbjct: 236 VLAKGDTFLSRSFEELEEIIYYMESCGVRKDWIGHVVGRCPQLLNLSMDELETRVRFYTD 295
Query: 625 YFDLSGKNVRCLATTQPKLI-TYNLHHVKCNTFAIKEEMGFKDEEIKMLLLNKPKL 461
++ + + PK + ++L + +K E G +E+ L+ KP+L
Sbjct: 296 -MGMNDNDFGTMVYDYPKALGFFSLEEMNSKVQYLK-EFGLSTDELGKLMAFKPQL 349
>03_06_0608 - 35039319-35039903,35040328-35040387
Length = 214
Score = 33.1 bits (72), Expect = 0.29
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -3
Query: 748 VNYLESKRFSDSEIKRIISKNPYWLNFST-IRIDRRFGFYQQYFDLSGKNVRCLATTQPK 572
+NY+ + SD ++++++ K P L + G + ++GK +R L PK
Sbjct: 132 LNYIRTLGLSDDDLRKLLKKFPEVLGCDLDSEVKLNVGKLDSDWGINGKTLRSLLLRNPK 191
Query: 571 LITYNL 554
++ YN+
Sbjct: 192 VLGYNV 197
>08_02_1248 - 25581974-25582975
Length = 333
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/94 (19%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = -3
Query: 709 IKRIISKNPYWLNFSTI-RIDRRFGFYQQYFDLSGKNVRCLATTQPKLITYNLHHVKCNT 533
I +I++K PY + +S R+ F + L G N++ + + P +++ ++ +
Sbjct: 171 IGKIMAKEPYIMGYSVDKRLRPTAEFLKSAVGLEGSNLQRVIMSFPDILSRDVDKILRPN 230
Query: 532 FAIKEEMGFKDEEIKMLLLNKPKLWMINQRMLIE 431
A + GF +++ L+ P + + + + +E
Sbjct: 231 LAFLQSCGFSKDQVMALVAGYPPVLIKSVKHCLE 264
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 211 HILQNYYK--ILHQFFQLALL*EHSSLFLGHIVHDLMTAKRDVFV 339
H L N +K ++H +L LL H+ ++ I H++ T KR V
Sbjct: 66 HYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIV 110
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 211 HILQNYYK--ILHQFFQLALL*EHSSLFLGHIVHDLMTAKRDVFV 339
H L N +K ++H +L LL H+ + I H++ T KR V
Sbjct: 66 HYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIV 110
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 211 HILQNYYK--ILHQFFQLALL*EHSSLFLGHIVHDLMTAKRDVFV 339
H L N +K ++H +L LL H+ + I H++ T KR V
Sbjct: 133 HYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIV 177
>06_01_0850 -
6472213-6473541,6474229-6474282,6474616-6474671,
6474824-6476012
Length = 875
Score = 29.1 bits (62), Expect = 4.8
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = -3
Query: 526 IKEEMGFKDEEIKMLLLNKPKLWMINQRMLIERFNYIHNIMKIPHTTILENAGVLLSRVF 347
+ EE+GF +++ +++ P ++++ + ++ + + I++ VLLS
Sbjct: 260 LMEELGFSQDDLLVIMRKLPNFLALSEKKIRRAVEFLKRDVGLEGRYIVQRP-VLLSYSL 318
Query: 346 --RIKQRHLFLQSLGRAQYDPKKVNYVPIKALVEKTDVEFCNNF 221
R+ RH L+ L +++Y AL EK +F N F
Sbjct: 319 ERRLLPRHCLLKVLRTKGLLNSELDYYSTAALSEK---KFVNKF 359
>03_02_0828 -
11592080-11592171,11592288-11592354,11592748-11592837,
11592914-11592967,11593109-11593169,11593252-11593319,
11593513-11593596,11594257-11594349,11594513-11594593,
11594665-11594793,11595193-11595273,11595401-11595484,
11596816-11596842,11597027-11597094,11597481-11597619
Length = 405
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 72 FLVAGIFDALLSHSINAFENKLLLGKTG 155
F VAGI D+ + H A + K+ +GK G
Sbjct: 378 FTVAGIIDSFVYHGHRAIKKKMEIGKLG 405
>01_01_1237 - 10047417-10047934,10048899-10049136
Length = 251
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 24 PGSXGSPPLVLSXAACFLVAGIFDAL 101
PG SPPL++ AA F+VAG+ A+
Sbjct: 11 PGGNLSPPLLVVAAAVFVVAGLSAAV 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,999,320
Number of Sequences: 37544
Number of extensions: 323600
Number of successful extensions: 752
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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