Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D10
         (864 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24895| Best HMM Match : mTERF (HMM E-Value=2.2e-05)                 45   7e-05
SB_5951| Best HMM Match : 5_nucleotid (HMM E-Value=0.0013)             33   0.40 
SB_34171| Best HMM Match : TPR_2 (HMM E-Value=1)                       28   8.5  
SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)             28   8.5  
SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34)                   28   8.5  

>SB_24895| Best HMM Match : mTERF (HMM E-Value=2.2e-05)
          Length = 342

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 26/120 (21%), Positives = 60/120 (50%)
 Frame = -3

Query: 526 IKEEMGFKDEEIKMLLLNKPKLWMINQRMLIERFNYIHNIMKIPHTTILENAGVLLSRVF 347
           +++ + F   +++ +LL +P++   ++  +  ++ Y +  M     +I     +    + 
Sbjct: 224 MEKVLRFNHHQLRNILLKQPRVLTFSKEGMKAKYRYCYEEMNASCNSIARCPRLFQCSLK 283

Query: 346 RIKQRHLFLQSLGRAQYDPKKVNYVPIKALVEKTDVEFCNNFAKCDIDDFNMFLKTL*TV 167
           RIK+RHLFL+ +GR + D    +Y  +  ++   +  F    A   +++FN F  +L +V
Sbjct: 284 RIKERHLFLRHVGRLKEDMIVDDY-GLGVILSPNEKIFAEKIALSSLEEFNDFRHSLSSV 342



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 27/129 (20%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
 Frame = -3

Query: 769 LEDLKTRVNYLESK-RFSDSEIKRIISKNPYWLNFSTIRIDRRFGFYQQYFDLSGKNV-R 596
           +  L  ++N++E   RF+  +++ I+ K P  L FS   +  ++ +  +  + S  ++ R
Sbjct: 214 IASLHDKINFMEKVLRFNHHQLRNILLKQPRVLTFSKEGMKAKYRYCYEEMNASCNSIAR 273

Query: 595 CLATTQPKLITYNLHHVKC-NTFAIKEEMGFKDEEIKMLLLNKPKLWMINQRM-LIERFN 422
           C    Q  L      H+   +   +KE+M   D  + ++L    K++     +  +E FN
Sbjct: 274 CPRLFQCSLKRIKERHLFLRHVGRLKEDMIVDDYGLGVILSPNEKIFAEKIALSSLEEFN 333

Query: 421 -YIHNIMKI 398
            + H++  +
Sbjct: 334 DFRHSLSSV 342


>SB_5951| Best HMM Match : 5_nucleotid (HMM E-Value=0.0013)
          Length = 405

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
 Frame = -3

Query: 796 KDPMIFCEHLEDLKTRVNYLESKRFSDSEIKRIISKNP--YWLNFSTIRIDRRFGFYQQY 623
           + P +    +E L  R+ YLE    +  + ++++ K+P    L+F     +     Y + 
Sbjct: 73  RQPQVLFLRIELLLQRIRYLEPLGLTPRQKRKLVEKSPPTMVLDFDPEVNEGGQVSYIRG 132

Query: 622 FDLSGKNVRCLATTQPKLITYNLHHVKCNTFAIKEEMGFKDEEIKMLLLNKPKLWMINQR 443
                 ++  +    P ++      +K     I+ ++G   +    LLLN P   +  + 
Sbjct: 133 VVRQDTDIVHILHPCPLMVVMRAFDLKNQVSLIQAQLGMAQQTALRLLLNMPCFLLHGRE 192

Query: 442 MLIERFNYIH 413
            + ERF  IH
Sbjct: 193 KMSERFQSIH 202


>SB_34171| Best HMM Match : TPR_2 (HMM E-Value=1)
          Length = 532

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -3

Query: 637 FYQQYFDLSGKNVRCLATTQPKLITYNLHHVKCNTFAIKEEMGFKDEEIKML 482
           +Y+ Y  +    +  L+  QP+L+  +   +  N F   +E G + EE   L
Sbjct: 450 YYEFYEIVDSSEIYRLSGQQPELVVCSYERITINNFEWTDEQGGEGEETSFL 501


>SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)
          Length = 762

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 613 SGKNVRCLATTQPKLITYNLHHVKCNTFAIKEEMGFKDEEIKMLLLNKPKLWMINQ 446
           SGK VR +AT +  LI+Y   H+ C  F   +    K +  + LL+    LW+  +
Sbjct: 348 SGKTVRRVATKRAGLISYVSSHLICIGFHSLQNQSRKSDR-RALLVCFLLLWLATE 402


>SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34)
          Length = 621

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
 Frame = -3

Query: 808 VIFYKDPMIFC--EHLEDLKTRVNYLESKRFSDSEIKRIISKNPYWLNFSTIRIDRRFGF 635
           + FYKD +I+C   + E  K R    +   FS++   +   +N +  +F  +  DR  G 
Sbjct: 352 IYFYKDGVIYCGRHYAEQFKPRCAACDELIFSET-YTQAEDRNWHQRHFCCLECDRDLG- 409

Query: 634 YQQYFDLSGKNVRCLATTQPKLITYNLHHVKCNTFAIKEEMGFKDEEIKMLL 479
             Q +   G    CL         Y  H + C      +   F+ +  K L+
Sbjct: 410 -GQLYVARGGQPHCLECYDK---YYAKHCMSCKKNIAADAQRFEHQVAKFLI 457


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,204,870
Number of Sequences: 59808
Number of extensions: 418623
Number of successful extensions: 971
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)