Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D10
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21710.1 68415.m02582 mitochondrial transcription termination...    37   0.015
At3g46950.1 68416.m05097 mitochondrial transcription termination...    35   0.061
At4g09620.1 68417.m01581 expressed protein hypothetical protein ...    35   0.080
At1g62110.1 68414.m07008 mitochondrial transcription termination...    32   0.57 
At1g62085.1 68414.m07006 mitochondrial transcription termination...    31   0.99 
At1g79220.1 68414.m09236 mitochondrial transcription termination...    30   1.7  
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)            30   2.3  
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)            30   2.3  
At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo...    29   4.0  
At2g11490.1 68415.m01236 hypothetical protein                          29   5.3  
At5g55580.1 68418.m06929 mitochondrial transcription termination...    28   7.0  
At3g07780.1 68416.m00949 expressed protein                             28   9.2  

>At2g21710.1 68415.m02582 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 640

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
 Frame = -3

Query: 766 EDLKTRVNYLESKRFSDSEIKRIISKNPYWLNFSTIRIDRRFGFYQQYFDLSGKNVRCLA 587
           E+L   V YLES       +  ++ + P  L+FS   +  R  F+ +   ++  +   + 
Sbjct: 279 EELNEIVEYLESNGVRRDWMGYVVGRCPELLSFSMEEVKSRVDFFLK-MGMNQNDFGTMV 337

Query: 586 TTQPKLITYNLHHVKCNTFAIKEEMGFKDEEIKMLLLNKPKLW--MINQRM--LIERFNY 419
              PK+I +    V        +E G   EE+  LL  KP L    I +R   L++ F Y
Sbjct: 338 YDYPKIIGFFSFQVMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYY 397

Query: 418 I 416
           +
Sbjct: 398 L 398


>At3g46950.1 68416.m05097 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 450

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 1/181 (0%)
 Frame = -3

Query: 760 LKTRVNYLESKRFSDSEIKRIISKNPYWLNFSTIRIDRRFGFYQQYFDLSGKNVRCLATT 581
           ++ +VN  +   FS++EI  I  K PY+L FS  +I   F   ++   L  + +  +  +
Sbjct: 253 IEEKVNVYKRLGFSEAEIWAIFKKWPYFLKFSEKKIILMFETLKK-CGLVEEEIISVLKS 311

Query: 580 QPKLITYNLHHVKCNTFAIKEEMGFKDEEIKMLLLNKPKLWMINQRMLIERFNYIHNIMK 401
           +P+ I  +   +  ++  +   +GF  ++ KM++   P     +   L ++F  +  +M 
Sbjct: 312 RPQCIRSSEQKI-LDSIEMFLGLGFSRDDFKMMVKRYPCCTAYSGETLRKKFEVLVKMMN 370

Query: 400 IPHTTILENAGVL-LSRVFRIKQRHLFLQSLGRAQYDPKKVNYVPIKALVEKTDVEFCNN 224
            P   ++    VL  S   RI  R   +++L        +    PI +++  TD EF   
Sbjct: 371 WPLEAVVMIPTVLGYSLEKRIVPRSNVIKALMSKGLIGSE--NPPISSVLVCTDQEFLKR 428

Query: 223 F 221
           +
Sbjct: 429 Y 429


>At4g09620.1 68417.m01581 expressed protein hypothetical protein
           F6E13.15 - Arabidopsis thaliana,PIR2:T00682
          Length = 212

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -3

Query: 769 LEDLKTRVNYLESKRFSDSEIKRIISKNPYWLNFSTIR-IDRRFGFYQQYFDLSGKNVRC 593
           +E L   + +L S   SD ++ +++ K P  L  S    +    G  +  + ++GK +R 
Sbjct: 123 VETLNQILEFLRSLGLSDEDLHKVMKKFPEVLGCSLEEEMKPNIGILENQWGITGKQLRN 182

Query: 592 LATTQPKLITYNL 554
           L    PK++ YN+
Sbjct: 183 LLLRNPKVLGYNV 195


>At1g62110.1 68414.m07008 mitochondrial transcription termination
           factor family protein / mTERF family protein contains
           Pfam profile PF02536: mTERF
          Length = 462

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 28/140 (20%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
 Frame = -3

Query: 760 LKTRVNYLESKRFSDSEIKRIISKNPYWLNFS------TIRIDRRFGFYQ-QYFDLSGKN 602
           ++ RVN  +   F+  ++  +  K PY+LN S      TI   ++ G  + +   +  K 
Sbjct: 259 IEERVNVYKGFGFAVEDVWAMFKKCPYFLNSSEKKIGQTIETLKKCGLLEDEVISVLKKY 318

Query: 601 VRCLATTQPKLITYNLHHVKCNTFAIKEEMGFKDEEIKMLLLNKPKLWMINQRMLIERFN 422
            +C+ T++ K++         N+  I   +GF  +E   ++   P+  +++   + ++  
Sbjct: 319 PQCIGTSEQKIL---------NSIEIFLGLGFSRDEFITMVKRFPQCLILSAETVKKKIE 369

Query: 421 YIHNIMKIPHTTILENAGVL 362
           ++   M  P   ++ N  VL
Sbjct: 370 FVVKKMNWPLKDVVSNPTVL 389


>At1g62085.1 68414.m07006 mitochondrial transcription termination
           factor family protein / mTERF family protein contains
           Pfam profile PF02536: mTERF
          Length = 461

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 26/133 (19%), Positives = 60/133 (45%)
 Frame = -3

Query: 760 LKTRVNYLESKRFSDSEIKRIISKNPYWLNFSTIRIDRRFGFYQQYFDLSGKNVRCLATT 581
           ++ +VN  +S  FS  ++  +  K P +LNFS  +I + +   ++   L   +V  +   
Sbjct: 262 IEAKVNVCKSLGFSVGDVWAMFKKCPSFLNFSENKIVQTWETLKK-CGLLEDDVLSVLKK 320

Query: 580 QPKLITYNLHHVKCNTFAIKEEMGFKDEEIKMLLLNKPKLWMINQRMLIERFNYIHNIMK 401
            P+ I  +   +  N+      +GF  +E+ M+    P+  +++   + ++  ++   M 
Sbjct: 321 FPQCINASEQKI-MNSIETFLGLGFSRDEVAMIAKRFPQCLILSAETVKKKTEFLVKKMN 379

Query: 400 IPHTTILENAGVL 362
            P   ++    VL
Sbjct: 380 WPLKAVVSTPAVL 392


>At1g79220.1 68414.m09236 mitochondrial transcription termination
           factor family protein / mTERF family protein weak
           similarity to mtDBP protein [Paracentrotus lividus]
           GI:4584695; contains Pfam profile PF02536: mTERF
          Length = 399

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
 Frame = -3

Query: 520 EEMGFKDEEIKMLLLNKPKLWMINQRMLIERFNYIHNIMKIP-HTTILENAGVLLSRVFR 344
           E+ GF +EEI  L    P L  ++   +     ++   MK+P H+ +     +LL+   R
Sbjct: 261 EKFGFSEEEIWHLYGKCPILLSLSVEKVQRNMTFVIASMKLPAHSVVKHPCLLLLNLESR 320

Query: 343 IKQRHLFLQSLGRAQYDPKKVNYVPIKALVEKTDVEFCNNFAKCDIDD 200
           +K R   ++ +   +  P  +  V I   V  ++  F   +  C   D
Sbjct: 321 LKPRADLVKRVLEMRLKP-LIKEVSIFRAVRMSEKRFLKVYVMCHPQD 367


>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 211 HILQNYYK--ILHQFFQLALL*EHSSLFLGHIVHDLMTAKRDVFV 339
           H L N +K  I+H   +L LL  H+  +   I H++ T KR   V
Sbjct: 66  HYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIV 110


>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 211 HILQNYYK--ILHQFFQLALL*EHSSLFLGHIVHDLMTAKRDVFV 339
           H L N +K  I+H   +L LL  H+  +   I H++ T KR   V
Sbjct: 66  HYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIV 110


>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
           ribosomal protein L32, human, PIR1:R5HU32
          Length = 133

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 211 HILQNYYK--ILHQFFQLALL*EHSSLFLGHIVHDLMTAKRDVFV 339
           H L N +K  ++H   +L LL  H+  +   I H++ T KR   V
Sbjct: 66  HYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIV 110


>At2g11490.1 68415.m01236 hypothetical protein 
          Length = 168

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 45  PLVLSXAACFLVAGIFDALLSHSINAFENKLLL 143
           PLV   A C +V  ++  +L+H  +AFE +LLL
Sbjct: 12  PLVTGWAICVMVVRVYKKILNH--DAFELRLLL 42


>At5g55580.1 68418.m06929 mitochondrial transcription termination
           factor family protein / mTERF family protein weak
           similarity to mtDBP protein [Paracentrotus lividus]
           GI:4584695; contains Pfam profile PF02536: mTERF
          Length = 496

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/98 (18%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = -3

Query: 751 RVNYLESKRFSDSEIKRIISKNPYWLNFSTIRIDRRFGFYQQYFDLSGKNVRCLATTQPK 572
           R++YL S      +IKR++ + P  L ++     +    +     +    +  +    P 
Sbjct: 222 RLDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPS 281

Query: 571 LITYNLHHVKCNTFA-IKEEMGFKDEEIKMLLLNKPKL 461
           L +Y++ +    T   + EE+G K+ ++  ++   P++
Sbjct: 282 LFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQI 319


>At3g07780.1 68416.m00949 expressed protein
          Length = 566

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 361 LSRVFRIKQRH--LFLQSLGRAQYDPKKVNYVPIKALVEKTDVEFCNNFAKCDIDD 200
           + R+ R+KQ    +F      A+ + +++  + +KA  EKT+ E+ +N+ K  + +
Sbjct: 451 VERIVRLKQAEAEMFQLKANEAKVEAERLERI-VKAKKEKTEEEYASNYLKLRLSE 505


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,311,744
Number of Sequences: 28952
Number of extensions: 296221
Number of successful extensions: 631
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)