Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D09
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       87   2e-19
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 86.6 bits (205), Expect = 2e-19
 Identities = 40/109 (36%), Positives = 63/109 (57%)
 Frame = -3

Query: 447 VIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRG 268
           ++FV+  ++   +A  L++ N+P   IH +  Q +R      FK  +  ILVAT +  RG
Sbjct: 455 LVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARG 514

Query: 267 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKI 121
           +DI+ V+ V NYD+P+  D Y+HR+ R GR G +G A +    E DA +
Sbjct: 515 LDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPL 563


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +2

Query: 122 ILASFSSDIIVMARPLVPNLPARATRCRYVSESSGMS*LKTMFTL 256
           IL SFS       RP     P       YV   S +S +K  FTL
Sbjct: 15  ILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTL 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,798
Number of Sequences: 438
Number of extensions: 3495
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)