Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_D09
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 291 4e-79
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 291 4e-79
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 291 4e-79
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 133 9e-32
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 133 9e-32
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 131 5e-31
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 128 3e-30
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 126 1e-29
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 125 2e-29
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 125 2e-29
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 114 4e-26
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 113 8e-26
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 112 2e-25
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 106 1e-23
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 105 2e-23
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 99 2e-21
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 95 4e-20
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 94 7e-20
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 91 6e-19
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 91 6e-19
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 91 8e-19
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 90 1e-18
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 90 1e-18
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 90 1e-18
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 89 2e-18
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 89 2e-18
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 89 2e-18
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 89 2e-18
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 88 4e-18
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 88 4e-18
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 85 3e-17
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 84 7e-17
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 84 7e-17
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 82 4e-16
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 81 7e-16
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 79 3e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 69 6e-15
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 74 1e-13
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 72 3e-13
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 71 7e-13
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 71 7e-13
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 69 4e-12
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 66 3e-11
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 66 3e-11
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 64 8e-11
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 63 1e-10
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 63 1e-10
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 63 1e-10
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 62 4e-10
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 62 4e-10
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 60 1e-09
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 60 1e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 60 1e-09
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 60 1e-09
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 59 2e-09
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 57 1e-08
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 56 2e-08
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 56 2e-08
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 55 5e-08
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 48 8e-08
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 54 9e-08
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 53 2e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 47 1e-05
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 47 1e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 46 2e-05
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 45 4e-05
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 44 9e-05
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ... 42 4e-04
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 42 4e-04
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 41 6e-04
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 40 0.001
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 40 0.001
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 36 0.018
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 34 0.098
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 33 0.17
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 31 0.69
At4g37020.1 68417.m05244 expressed protein 30 1.6
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 29 2.8
At1g34300.1 68414.m04256 lectin protein kinase family protein co... 29 2.8
At5g62510.1 68418.m07845 F-box family protein contains Pfam prof... 28 4.9
At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA he... 28 4.9
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 291 bits (713), Expect = 4e-79
Identities = 138/207 (66%), Positives = 165/207 (79%)
Frame = -3
Query: 666 TPHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXX 487
TPH KQVMM SATLSKEIRPVCKKFMQDPME+YVDDEAKL HGL QHY+
Sbjct: 219 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRK 278
Query: 486 XXXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQ 307
LD L+FNQVVIFVKSV R L +LL + NFP+I IH M+Q+ERL+RY+ FK+
Sbjct: 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGH 338
Query: 306 KRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDA 127
KRILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLAIT ++ +D+
Sbjct: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDS 398
Query: 126 KILNQVQDRFDVNITELPEEIELSTYI 46
++LNQVQ+RF+V+I ELPE+I+ STY+
Sbjct: 399 EVLNQVQERFEVDIKELPEQIDTSTYM 425
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 291 bits (713), Expect = 4e-79
Identities = 138/207 (66%), Positives = 165/207 (79%)
Frame = -3
Query: 666 TPHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXX 487
TPH KQVMM SATLSKEIRPVCKKFMQDPME+YVDDEAKL HGL QHY+
Sbjct: 136 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRK 195
Query: 486 XXXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQ 307
LD L+FNQVVIFVKSV R L +LL + NFP+I IH M+Q+ERL+RY+ FK+
Sbjct: 196 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGH 255
Query: 306 KRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDA 127
KRILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLAIT ++ +D+
Sbjct: 256 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDS 315
Query: 126 KILNQVQDRFDVNITELPEEIELSTYI 46
++LNQVQ+RF+V+I ELPE+I+ STY+
Sbjct: 316 EVLNQVQERFEVDIKELPEQIDTSTYM 342
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 291 bits (713), Expect = 4e-79
Identities = 138/207 (66%), Positives = 165/207 (79%)
Frame = -3
Query: 666 TPHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXX 487
TPH KQVMM SATLSKEIRPVCKKFMQDPME+YVDDEAKL HGL QHY+
Sbjct: 219 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRK 278
Query: 486 XXXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQ 307
LD L+FNQVVIFVKSV R L +LL + NFP+I IH M+Q+ERL+RY+ FK+
Sbjct: 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGH 338
Query: 306 KRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDA 127
KRILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLAIT ++ +D+
Sbjct: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDS 398
Query: 126 KILNQVQDRFDVNITELPEEIELSTYI 46
++LNQVQ+RF+V+I ELPE+I+ STY+
Sbjct: 399 EVLNQVQERFEVDIKELPEQIDTSTYM 425
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 133 bits (322), Expect = 9e-32
Identities = 71/207 (34%), Positives = 112/207 (54%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXX 484
P +Q++M SAT ++ +F+ +P + + DE LK G+ Q Y
Sbjct: 302 PESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLK--GITQFYAFVEERQKIHCL 359
Query: 483 XXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQK 304
L+ NQ +IF SV R LA+ +T+ + IH M QD R + F++
Sbjct: 360 NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC 419
Query: 303 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAK 124
R LV T+LF RG+DI+ VN+V N+D P++++TYLHRV R+GRFG GLA+ +I+ E D
Sbjct: 420 RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYE-DRF 478
Query: 123 ILNQVQDRFDVNITELPEEIELSTYIE 43
L +++ I ++P I+ + Y +
Sbjct: 479 NLYRIEQELGTEIKQIPPHIDQAIYCQ 505
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 133 bits (322), Expect = 9e-32
Identities = 71/207 (34%), Positives = 112/207 (54%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXX 484
P +Q++M SAT ++ +F+ +P + + DE LK G+ Q Y
Sbjct: 302 PESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLK--GITQFYAFVEERQKIHCL 359
Query: 483 XXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQK 304
L+ NQ +IF SV R LA+ +T+ + IH M QD R + F++
Sbjct: 360 NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC 419
Query: 303 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAK 124
R LV T+LF RG+DI+ VN+V N+D P++++TYLHRV R+GRFG GLA+ +I+ E D
Sbjct: 420 RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYE-DRF 478
Query: 123 ILNQVQDRFDVNITELPEEIELSTYIE 43
L +++ I ++P I+ + Y +
Sbjct: 479 NLYRIEQELGTEIKQIPPHIDQAIYCQ 505
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 131 bits (316), Expect = 5e-31
Identities = 68/201 (33%), Positives = 113/201 (56%), Gaps = 1/201 (0%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXX 484
PH QV + SATL +EI + +KFM DP+ + V + +L G++Q+YV
Sbjct: 193 PHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPD-ELTLEGIKQYYVDVDKEEWKFDT 251
Query: 483 XXXL-DVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQ 307
L L NQ +IF + Q+ L + + NF +H + Q ER QF+ F+
Sbjct: 252 LCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFK 311
Query: 306 KRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDA 127
R+L+A++++ RG+D++ V+ V NYD+P + + Y+HR+ RAGRFG +G+AI + +D
Sbjct: 312 SRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVK-SSDM 370
Query: 126 KILNQVQDRFDVNITELPEEI 64
K L ++ + I E+P ++
Sbjct: 371 KDLKDIERHYGTKIREMPADL 391
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 128 bits (309), Expect = 3e-30
Identities = 65/201 (32%), Positives = 112/201 (55%), Gaps = 1/201 (0%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXX 484
P QV + SATL EI + KFM +P+++ V + +L G++Q +V
Sbjct: 206 PPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRD-ELTLEGIKQFFVAVEKEEWKFDT 264
Query: 483 XXXL-DVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQ 307
L D L Q VIF + ++ L++ + NF +H +M Q ER + +F+
Sbjct: 265 LCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGD 324
Query: 306 KRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDA 127
R+L+ T+++ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG KG+AI + + D
Sbjct: 325 SRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSD-DI 383
Query: 126 KILNQVQDRFDVNITELPEEI 64
KIL ++ + I E+P +
Sbjct: 384 KILRDIEQYYSTQIDEMPMNV 404
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 126 bits (304), Expect = 1e-29
Identities = 67/207 (32%), Positives = 109/207 (52%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXX 484
P +Q++M SAT ++ ++++ P + + D+ L G+ Q+Y
Sbjct: 325 PESRQILMFSATFPVTVKSFKDRYLKKPYIINLMDQLTLM--GVTQYYAFVEERQKVHCL 382
Query: 483 XXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQK 304
L+ NQ +IF SV R LA+ +T+ + IH M QD R + F++
Sbjct: 383 NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGAC 442
Query: 303 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAK 124
R LV T+LF RG+DI+ VN+V N+D P S++YLHRV R+GRFG GLA+ +++ E+ K
Sbjct: 443 RNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFK 502
Query: 123 ILNQVQDRFDVNITELPEEIELSTYIE 43
+ Q + I +P I+ + Y +
Sbjct: 503 -MYQTEQELGTEIKPIPSLIDKAIYCQ 528
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 125 bits (302), Expect = 2e-29
Identities = 67/207 (32%), Positives = 108/207 (52%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXX 484
P +Q +M SAT ++ + ++ P + + D+ L G+ Q+Y
Sbjct: 295 PQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLTLM--GVTQYYAFVEERQKVHCL 352
Query: 483 XXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQK 304
L+ NQ +IF SV R LA+ +T+ + IH M QD R + +F++
Sbjct: 353 NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGAC 412
Query: 303 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAK 124
R LV T+LF RG+DI+ VN+V N+D P S++YLHRV R+GRFG GLA+ +++ E+ K
Sbjct: 413 RNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFK 472
Query: 123 ILNQVQDRFDVNITELPEEIELSTYIE 43
+ Q + I +P I+ + Y +
Sbjct: 473 -MYQTEQELGTEIKPIPSNIDQAIYCQ 498
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 125 bits (302), Expect = 2e-29
Identities = 67/207 (32%), Positives = 108/207 (52%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXX 484
P +Q +M SAT ++ + ++ P + + D+ L G+ Q+Y
Sbjct: 295 PQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLTLM--GVTQYYAFVEERQKVHCL 352
Query: 483 XXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQK 304
L+ NQ +IF SV R LA+ +T+ + IH M QD R + +F++
Sbjct: 353 NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGAC 412
Query: 303 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAK 124
R LV T+LF RG+DI+ VN+V N+D P S++YLHRV R+GRFG GLA+ +++ E+ K
Sbjct: 413 RNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFK 472
Query: 123 ILNQVQDRFDVNITELPEEIELSTYIE 43
+ Q + I +P I+ + Y +
Sbjct: 473 -MYQTEQELGTEIKPIPSNIDQAIYCQ 498
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 114 bits (275), Expect = 4e-26
Identities = 62/201 (30%), Positives = 109/201 (54%), Gaps = 1/201 (0%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXX 484
P QV + SAT+ E + +KFM P+ + V + +L G++Q YV
Sbjct: 212 PSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD-ELTLEGIKQFYVNVDKEEWKLET 270
Query: 483 XXXL-DVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQ 307
L + L Q VIFV + ++ L + ++ H +M Q+ R ++F+
Sbjct: 271 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 330
Query: 306 KRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDA 127
R+L+ T+L RG+D+++V++V N+D+P + YLHR+ R+GRFG KG+AI ++ E D
Sbjct: 331 SRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSE-DE 389
Query: 126 KILNQVQDRFDVNITELPEEI 64
+++ +Q ++V + ELP +
Sbjct: 390 RMMADIQRFYNVVVEELPSNV 410
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 113 bits (273), Expect = 8e-26
Identities = 61/197 (30%), Positives = 108/197 (54%), Gaps = 1/197 (0%)
Frame = -3
Query: 651 QVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXL 472
QV + SAT+ E + +KFM P+ + V + +L G++Q YV L
Sbjct: 214 QVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELTLEGIKQFYVNVEKEEWKLETLCDL 272
Query: 471 -DVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRIL 295
+ L Q VIFV + ++ L + ++ H +M Q+ R ++F+ R+L
Sbjct: 273 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332
Query: 294 VATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILN 115
+ T+L RG+D+++V++V N+D+P + YLHR+ R+GRFG KG+AI ++ +D ++L
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVT-RDDERMLF 391
Query: 114 QVQDRFDVNITELPEEI 64
+Q ++V + ELP +
Sbjct: 392 DIQKFYNVVVEELPSNV 408
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 112 bits (270), Expect = 2e-25
Identities = 61/197 (30%), Positives = 108/197 (54%), Gaps = 1/197 (0%)
Frame = -3
Query: 651 QVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXL 472
QV + SAT+ E + +KFM P+ + V + +L G++Q YV L
Sbjct: 214 QVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELTLEGIKQFYVNVEKEDWKLETLCDL 272
Query: 471 -DVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRIL 295
+ L Q VIFV + ++ L + ++ H +M Q+ R ++F+ R+L
Sbjct: 273 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332
Query: 294 VATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILN 115
+ T+L RG+D+++V++V N+D+P + YLHR+ R+GRFG KG+AI ++ +D ++L
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVT-LDDQRMLF 391
Query: 114 QVQDRFDVNITELPEEI 64
+Q ++V + ELP +
Sbjct: 392 DIQKFYNVVVEELPSNV 408
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 106 bits (255), Expect = 1e-23
Identities = 53/198 (26%), Positives = 105/198 (53%)
Frame = -3
Query: 654 KQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXX 475
+Q ++ SAT +++ + +K + P+E+ V + + Q V
Sbjct: 711 RQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL 770
Query: 474 LDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRIL 295
+ E ++++FV+S ++C AL + + ++P + +H Q +R S FK+ +L
Sbjct: 771 GEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLL 830
Query: 294 VATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILN 115
+AT++ RG+D++ + +V N+D P + Y+HRV R GR G KG A+T IS E+DAK
Sbjct: 831 IATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFIS-EDDAKYAP 889
Query: 114 QVQDRFDVNITELPEEIE 61
+ +++ +P++++
Sbjct: 890 DLVKALELSEQPVPDDLK 907
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 105 bits (253), Expect = 2e-23
Identities = 56/202 (27%), Positives = 109/202 (53%), Gaps = 10/202 (4%)
Frame = -3
Query: 651 QVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXL 472
QV++ SAT ++ ++ + ++DP +++V E L ++Q+ V
Sbjct: 275 QVLLFSATFNETVKDFVARTVKDPNQLFVKRE-DLALDSVKQYKVVCPKEQNKIEVIKDQ 333
Query: 471 --DVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRI 298
++ + Q +IFVK+ + + L + + +H N+T+ +R ++FK+ ++
Sbjct: 334 IMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQV 393
Query: 297 LVATNLFGRGMDIERVNIVFNYDMP-------EDSDTYLHRVARAGRFGTKGLAITMISD 139
L+AT++ RG D +RVN+V NY++P D + YLHRV RAGRFG KG ++ D
Sbjct: 394 LIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLLD 453
Query: 138 EN-DAKILNQVQDRFDVNITEL 76
+ D +++ +++ F+ N+ E+
Sbjct: 454 DGWDKEVMEKIEKYFEANVKEI 475
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 99.1 bits (236), Expect = 2e-21
Identities = 47/175 (26%), Positives = 91/175 (52%), Gaps = 1/175 (0%)
Frame = -3
Query: 654 KQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHY-VXXXXXXXXXXXXX 478
+Q ++ SAT +E+ + ++F++DP + + + Q +
Sbjct: 344 RQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTL 403
Query: 477 XLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRI 298
+++ ++++IFV++ + C + + L +PA+ IH + TQ ER +FK + I
Sbjct: 404 LKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPI 463
Query: 297 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 133
+ AT++ RG+D++ + V NYD P + Y+HR+ R GR G KG+A T + +N
Sbjct: 464 MTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDN 518
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 95.1 bits (226), Expect = 4e-20
Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 1/175 (0%)
Frame = -3
Query: 654 KQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHY-VXXXXXXXXXXXXX 478
+Q + SAT KE+ + KKF+ +P +V + ++Q V
Sbjct: 278 RQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKL 337
Query: 477 XLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRI 298
D+++ +++++F+ + + C + + L +PA+ IH + +Q ER +F+ + I
Sbjct: 338 LEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPI 397
Query: 297 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 133
+ AT++ RG+D++ V V NYD P + Y+HR+ R GR G KG A T + N
Sbjct: 398 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 94.3 bits (224), Expect = 7e-20
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 2/182 (1%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVD--DEAKLKXHGLQQHYVXXXXXXXXX 490
P +Q +M +AT KE+R + + +P +V + DE Q V
Sbjct: 404 PTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSR 463
Query: 489 XXXXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDF 310
++++IF + + C LA+ LT + F A IH + +Q ER QF+
Sbjct: 464 LEQILRSQEPGSKIIIFCSTKRMCDQLARNLT-RTFGAAAIHGDKSQAERDDVLNQFRSG 522
Query: 309 QKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEND 130
+ +LVAT++ RG+D++ + +V NYD P + Y+HR+ R GR G GLA T D+ D
Sbjct: 523 RTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQ-D 581
Query: 129 AK 124
AK
Sbjct: 582 AK 583
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 91.1 bits (216), Expect = 6e-19
Identities = 58/208 (27%), Positives = 106/208 (50%), Gaps = 1/208 (0%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXX 484
P ++ + SAT++K++R + + +++P+++ + L+Q Y
Sbjct: 193 PLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYST-VDTLKQQYRFVAAKYKDCYL 251
Query: 483 XXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQK 304
L + + +IF ++ LA +L F AI I MTQ +RL +FK +
Sbjct: 252 VYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGEC 311
Query: 303 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAK 124
ILV T++ RG+DI V++V NYD+P +S Y+HRV R R G G+ I+++ ++ + +
Sbjct: 312 NILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLV-NQYELE 370
Query: 123 ILNQVQDRFDVNITELP-EEIELSTYIE 43
Q++ + E P EE E+ + +E
Sbjct: 371 WYIQIEKLIGKKLPEYPAEEDEVLSLLE 398
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 91.1 bits (216), Expect = 6e-19
Identities = 52/199 (26%), Positives = 102/199 (51%), Gaps = 2/199 (1%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYV--DDEAKLKXHGLQQHYVXXXXXXXXX 490
P +Q MM SAT+ IR + KK++ +P+ V + D + KL +
Sbjct: 279 PEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASI 338
Query: 489 XXXXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDF 310
+ + + ++F ++ + L+ L ++F +H +++Q +R F+D
Sbjct: 339 IGPLVTEHAKGGKCIVFTQTKRDADRLSYALA-RSFKCEALHGDISQSQRERTLAGFRDG 397
Query: 309 QKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEND 130
ILVAT++ RG+D+ V+++ +Y++P +++T++HR R GR G KG AI +I ++
Sbjct: 398 HFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAI-LIYSQDQ 456
Query: 129 AKILNQVQDRFDVNITELP 73
++ + ++ TELP
Sbjct: 457 SRAVKIIEREVGSRFTELP 475
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 90.6 bits (215), Expect = 8e-19
Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 2/179 (1%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVD--DEAKLKXHGLQQHYVXXXXXXXXX 490
P +Q +M +AT KE+R + + +P++V + DE Q V
Sbjct: 610 PPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERR 669
Query: 489 XXXXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDF 310
++V+IF + + C LA+ + ++F A+ IH + TQ ER QF+
Sbjct: 670 LEQILRSQERGSKVIIFCSTKRLCDHLARSV-GRHFGAVVIHGDKTQGERDWVLNQFRSG 728
Query: 309 QKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 133
+ +L+AT++ RG+DI+ + +V NYD P + Y+HR+ R GR G G+A T ++++
Sbjct: 729 KSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQD 787
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 89.8 bits (213), Expect = 1e-18
Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 2/206 (0%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXH-GLQQHY-VXXXXXXXXX 490
P +Q +M +AT K +R + + +P +V + + +L + + QH V
Sbjct: 333 PTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR 392
Query: 489 XXXXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDF 310
++V+IF + + C L + LT Q F A IH + +Q ER + QF+
Sbjct: 393 LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSG 451
Query: 309 QKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEND 130
+ +LVAT++ RG+D++ + V NYD P + Y+HR+ R GR G G A T D++
Sbjct: 452 RTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDS 511
Query: 129 AKILNQVQDRFDVNITELPEEIELST 52
+ ++ N P+ E++T
Sbjct: 512 KHASDLIKILEGANQRVPPQIREMAT 537
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 89.8 bits (213), Expect = 1e-18
Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 2/206 (0%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXH-GLQQHY-VXXXXXXXXX 490
P +Q +M +AT K +R + + +P +V + + +L + + QH V
Sbjct: 333 PTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR 392
Query: 489 XXXXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDF 310
++V+IF + + C L + LT Q F A IH + +Q ER + QF+
Sbjct: 393 LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSG 451
Query: 309 QKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEND 130
+ +LVAT++ RG+D++ + V NYD P + Y+HR+ R GR G G A T D++
Sbjct: 452 RTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDS 511
Query: 129 AKILNQVQDRFDVNITELPEEIELST 52
+ ++ N P+ E++T
Sbjct: 512 KHASDLIKILEGANQRVPPQIREMAT 537
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 89.8 bits (213), Expect = 1e-18
Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 2/206 (0%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXH-GLQQHY-VXXXXXXXXX 490
P +Q +M +AT K +R + + +P +V + + +L + + QH V
Sbjct: 333 PTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR 392
Query: 489 XXXXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDF 310
++V+IF + + C L + LT Q F A IH + +Q ER + QF+
Sbjct: 393 LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSG 451
Query: 309 QKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEND 130
+ +LVAT++ RG+D++ + V NYD P + Y+HR+ R GR G G A T D++
Sbjct: 452 RTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDS 511
Query: 129 AKILNQVQDRFDVNITELPEEIELST 52
+ ++ N P+ E++T
Sbjct: 512 KHASDLIKILEGANQRVPPQIREMAT 537
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 89.4 bits (212), Expect = 2e-18
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 1/194 (0%)
Frame = -3
Query: 642 MXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXLDVL 463
+ SATL + + + M D + V + + ++Q V
Sbjct: 319 LFSATLPDSVEELARSIMHDAVRVIIGRK-NTASETVKQKLVFAGSEEGKLLALRQSFAE 377
Query: 462 EFNQ-VVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVAT 286
N V+IFV+S +R L L +N A IH ++ ER + QF+ +K +L+AT
Sbjct: 378 SLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIAT 437
Query: 285 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQ 106
++ RGMD + +N V NYD P+ + Y+HR+ R+GR G G AIT + E D L +
Sbjct: 438 DVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYT-EQDVPFLRNIA 496
Query: 105 DRFDVNITELPEEI 64
+ + E+P I
Sbjct: 497 NTMMSSGCEVPSWI 510
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 89.4 bits (212), Expect = 2e-18
Identities = 54/190 (28%), Positives = 96/190 (50%), Gaps = 3/190 (1%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXX 484
P +Q ++ SAT++ ++ + + + Y E L Q ++
Sbjct: 232 PKSRQTLLFSATMTSNLQALLEH-SSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYL 290
Query: 483 XXXLDVLE---FNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKD 313
L +E +IFV + + C L+ +L + I +H +Q RLS +FK
Sbjct: 291 VHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKS 350
Query: 312 FQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 133
+ IL+AT++ RG+DI V++V NYD+P D Y+HRV R R G GLA+++I+ E
Sbjct: 351 GKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIIT-ET 409
Query: 132 DAKILNQVQD 103
D K+++++++
Sbjct: 410 DVKLIHKIEE 419
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 89.0 bits (211), Expect = 2e-18
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 3/188 (1%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXX 484
P +Q M+ SAT+++E++ + K + P+ + D A+ + GL + V
Sbjct: 342 PKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSAR-RPPGLTEEVVRIRRTREANQE 400
Query: 483 XXXLDVLEF---NQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKD 313
L + ++V+IF + Q L L A +H N+TQ +RL + F+
Sbjct: 401 AVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRK 460
Query: 312 FQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 133
+ L+AT++ RG+DI V V NY P + D+Y+HRV R R G +G A+T ++D +
Sbjct: 461 QEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTD-S 519
Query: 132 DAKILNQV 109
D +L +
Sbjct: 520 DRSLLKVI 527
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 89.0 bits (211), Expect = 2e-18
Identities = 50/193 (25%), Positives = 97/193 (50%)
Frame = -3
Query: 642 MXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXLDVL 463
M SAT+ + + +K++++P+ V + K + QH + LD L
Sbjct: 516 MFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDL-ISQHVIMMKESEKFFRLQKLLDEL 574
Query: 462 EFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATN 283
++FV + + C ++A+ L + +H +Q++R + F+ + +LVAT+
Sbjct: 575 GEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATD 634
Query: 282 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQD 103
+ GRG+DI V V NYDMP+ + Y HR+ R GR G G+A + ++ +D ++ ++
Sbjct: 635 VVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLT-LHDTEVFYDLKQ 693
Query: 102 RFDVNITELPEEI 64
+ + +P E+
Sbjct: 694 MLVQSNSAVPPEL 706
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 88.2 bits (209), Expect = 4e-18
Identities = 47/126 (37%), Positives = 70/126 (55%)
Frame = -3
Query: 447 VIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRG 268
++FV++ + L L FPA IH + TQ ER + FK + ILVAT++ RG
Sbjct: 412 LVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARG 471
Query: 267 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQDRFDVN 88
+DI V V N+D+P D D Y+HR+ R GR G G+A T +EN+A++ + +
Sbjct: 472 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIA-TAFFNENNAQLARSLAELMQEA 530
Query: 87 ITELPE 70
E+PE
Sbjct: 531 NQEVPE 536
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 88.2 bits (209), Expect = 4e-18
Identities = 47/126 (37%), Positives = 70/126 (55%)
Frame = -3
Query: 447 VIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRG 268
++FV++ + L L FPA IH + TQ ER + FK + ILVAT++ RG
Sbjct: 412 LVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARG 471
Query: 267 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQDRFDVN 88
+DI V V N+D+P D D Y+HR+ R GR G G+A T +EN+A++ + +
Sbjct: 472 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIA-TAFFNENNAQLARSLAELMQEA 530
Query: 87 ITELPE 70
E+PE
Sbjct: 531 NQEVPE 536
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 85.4 bits (202), Expect = 3e-17
Identities = 43/105 (40%), Positives = 60/105 (57%)
Frame = -3
Query: 447 VIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRG 268
++FV++ + +L L FPA IH + TQ ER + FK + ILVAT++ RG
Sbjct: 422 LVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARG 481
Query: 267 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 133
+DI V V N+D+P D D Y+HR+ R GR G GLA +D N
Sbjct: 482 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGN 526
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 84.2 bits (199), Expect = 7e-17
Identities = 42/105 (40%), Positives = 60/105 (57%)
Frame = -3
Query: 447 VIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRG 268
++FV++ + +L L FPA IH + +Q ER + FK + ILVAT++ RG
Sbjct: 409 LVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARG 468
Query: 267 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 133
+DI V V N+D+P D D Y+HR+ R GR G GLA +D N
Sbjct: 469 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNN 513
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 84.2 bits (199), Expect = 7e-17
Identities = 51/199 (25%), Positives = 99/199 (49%), Gaps = 2/199 (1%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYV--DDEAKLKXHGLQQHYVXXXXXXXXX 490
P +Q MM SAT+ IR + KK++ +P+ + + D + KL
Sbjct: 291 PAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASI 350
Query: 489 XXXXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDF 310
+ + + ++F ++ + LA L +++ +H +++Q +R F+D
Sbjct: 351 IGPLVKEHGKGGKCIVFTQTKRDADRLAFGLA-KSYKCEALHGDISQAQRERTLAGFRDG 409
Query: 309 QKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEND 130
ILVAT++ RG+D+ V++V +Y++P +++T++HR R GR G KG AI +I ++
Sbjct: 410 NFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAI-LIHGQDQ 468
Query: 129 AKILNQVQDRFDVNITELP 73
+ + ++ ELP
Sbjct: 469 TRAVKMIEKEVGSRFNELP 487
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 81.8 bits (193), Expect = 4e-16
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 4/178 (2%)
Frame = -3
Query: 654 KQVMMXSATLSKEIRPVCKKFMQ-DPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXX 478
+Q++M SAT ++ + ++FM +P++V + H + Q
Sbjct: 297 RQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIA 356
Query: 477 XLDVL---EFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQ 307
L+ + N+V++F L + L + + A+ IH N Q ER FK+
Sbjct: 357 LLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGS 416
Query: 306 KRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 133
+LVAT++ RG+DI V +V NY P ++ Y+HR+ R GR G KG+A T + N
Sbjct: 417 CPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLN 474
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 81.0 bits (191), Expect = 7e-16
Identities = 48/209 (22%), Positives = 100/209 (47%), Gaps = 3/209 (1%)
Frame = -3
Query: 654 KQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQ--HYVXXXXXXXXXXXX 481
+Q ++ SAT+ ++ + ++ + DP+ V V E + + Q + +
Sbjct: 407 RQTLLFSATMPWKVEKLAREILSDPIRVTVG-EVGMANEDITQVVNVIPSDAEKLPWLLE 465
Query: 480 XXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKR 301
+++ V++F + LT +F +H + Q R+ Q+FK
Sbjct: 466 KLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHH 525
Query: 300 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK-GLAITMISDENDAK 124
+L+AT++ RG+DI+ + V NYD+ +D D ++HR+ R GR G + G+A T+++ + +A+
Sbjct: 526 VLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVT-QREAR 584
Query: 123 ILNQVQDRFDVNITELPEEIELSTYIEGR 37
++ + +P E+ +GR
Sbjct: 585 FAGELVNSLVAAGQNVPPELTDLAMKDGR 613
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 78.6 bits (185), Expect = 3e-15
Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 1/173 (0%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEV-YVDDEAKLKXHGLQQHYVXXXXXXXXXX 487
P +Q M+ SAT+ ++ + +K++ +P+ + V D+ + G++ + +
Sbjct: 281 PTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTI 340
Query: 486 XXXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQ 307
+ V I +R L + +H +++Q +R F+ +
Sbjct: 341 LSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGK 400
Query: 306 KRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITM 148
+LVAT++ RG+DI V++V +Y++P D +T++HR R GR G +G AI M
Sbjct: 401 FTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILM 453
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 68.9 bits (161), Expect(2) = 6e-15
Identities = 31/87 (35%), Positives = 54/87 (62%)
Frame = -3
Query: 321 FKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMIS 142
FK +L+AT++ RG+D++ + +V N+D P + Y+HRV R GR G KG A+T IS
Sbjct: 660 FKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFIS 719
Query: 141 DENDAKILNQVQDRFDVNITELPEEIE 61
E+DAK + +++ +P++++
Sbjct: 720 -EDDAKYAPDLVKALELSEQPVPDDVK 745
Score = 29.1 bits (62), Expect(2) = 6e-15
Identities = 15/81 (18%), Positives = 37/81 (45%)
Frame = -3
Query: 654 KQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXX 475
+Q ++ SAT +++ + +K + P+E+ V + + Q +
Sbjct: 578 RQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELL 637
Query: 474 LDVLEFNQVVIFVKSVQRCIA 412
+ E +V++FV+S ++ I+
Sbjct: 638 GEWYEKGKVLVFVRSQEKSIS 658
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 73.7 bits (173), Expect = 1e-13
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 2/178 (1%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDD-EAKLKXHGLQQHYVXXXXXXXXXX 487
P +Q + SAT + +++ + + + P+ V VDD K+ GL+Q Y
Sbjct: 265 PKTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLIL 324
Query: 486 XXXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQ 307
L ++++F + + +++ + IH M Q+ R + F +
Sbjct: 325 LISFLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAK 384
Query: 306 KRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR-FGTKGLAITMISDE 136
K IL+ T++ RG+DI V+ + YD P+ Y+HRV R R G KG A+ ++ E
Sbjct: 385 KGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPE 442
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 72.1 bits (169), Expect = 3e-13
Identities = 36/113 (31%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Frame = -3
Query: 450 VVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGR 271
V+IF ++ + + L + A+ IH Q++R FK +K +LVAT++ +
Sbjct: 400 VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASK 459
Query: 270 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMIS-DENDAKILN 115
G+D + V NYDMP + + Y+HR+ R GR G G+A T I+ ++++ +L+
Sbjct: 460 GLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD 512
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 70.9 bits (166), Expect = 7e-13
Identities = 45/191 (23%), Positives = 97/191 (50%), Gaps = 4/191 (2%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEA-KLKXHGLQQHYVXXXXXXXXXX 487
P +Q ++ SAT +K+++ + + ++DP + V EA L Q +
Sbjct: 247 PKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDM 306
Query: 486 XXXXLDVLEFNQVVIFVKSVQRCIALAQLLTD--QNFPAIGIHRNMTQDERLSRYQQFKD 313
+ +++++F+ + ++ + + P +H M+Q++R+ Y QF +
Sbjct: 307 LWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIE 366
Query: 312 FQKRILVATNLFGRGMDIER-VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDE 136
Q +L T++ RG+D ++ V+ V D PED +Y+HRV R RF T+G ++ ++
Sbjct: 367 RQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLT-P 424
Query: 135 NDAKILNQVQD 103
++ K++ ++Q+
Sbjct: 425 SEEKMIEKLQE 435
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 70.9 bits (166), Expect = 7e-13
Identities = 37/110 (33%), Positives = 62/110 (56%)
Frame = -3
Query: 450 VVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGR 271
V+IF ++ + + L + A+ IH Q++R FK +K +LVAT++ +
Sbjct: 351 VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASK 410
Query: 270 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKI 121
G+D + V NYDMP + + Y+HR+ R GR G G+A T I ++N ++I
Sbjct: 411 GLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFI-NKNQSEI 459
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 68.5 bits (160), Expect = 4e-12
Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 3/179 (1%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAK-LKXHGLQQHYVXXXXXXXXXX 487
P +Q + SAT S ++ + + + P+ + VD+ K + GL+Q Y
Sbjct: 330 PKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLF 389
Query: 486 XXXXLDVLEFNQ-VVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDF 310
L + + +++F + + A+L F + I + Q++R + QF
Sbjct: 390 LLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKA 449
Query: 309 QKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR-FGTKGLAITMISDE 136
+ IL+ TN+ RG+D V+ + YD P++ Y+HRV R R G KG A+ +++ +
Sbjct: 450 ETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQ 508
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 6/180 (3%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPME-VYVDDEAKLKXHGL--QQHYVXXXXXXXX 493
P +Q + SAT+ +E+R +C ++ E V E ++ H Q H +
Sbjct: 238 PKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFS 297
Query: 492 XXXXXXLDVLEFN---QVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQ 322
+ + N +V++F + +A LL + N IH Q R +
Sbjct: 298 LLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNE 357
Query: 321 FKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMIS 142
F+ + ILV +++ RG+D V +V +P+D + Y+HR+ R GR G +G I +++
Sbjct: 358 FRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLA 417
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 65.7 bits (153), Expect = 3e-11
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 1/175 (0%)
Frame = -3
Query: 654 KQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXH-GLQQHYVXXXXXXXXXXXXX 478
+Q ++ SATL + K +++P V +D E K+ L V
Sbjct: 205 RQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLV 264
Query: 477 XLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRI 298
+ Q +IFV + + L +N + +M QD R +F+ + +
Sbjct: 265 REHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTML 324
Query: 297 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 133
L+ T++ RG+DI ++ V N+D P ++HRV RA R G G A + ++ E+
Sbjct: 325 LIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPED 379
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 64.1 bits (149), Expect = 8e-11
Identities = 26/75 (34%), Positives = 46/75 (61%)
Frame = -3
Query: 369 IHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 190
+H +M Q++R S + FK ++ +L++T++ RG+D +V + YD P ++ Y+HRV
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVG 438
Query: 189 RAGRFGTKGLAITMI 145
R R G KG A+ +
Sbjct: 439 RTARIGEKGEALLFL 453
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 63.3 bits (147), Expect = 1e-10
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 7/210 (3%)
Frame = -3
Query: 651 QVMMXSATLSKEIRPVCKKFMQ-DPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXX 475
Q ++ SATL ++ + +F++ D + + K+K +H
Sbjct: 283 QTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIP- 341
Query: 474 LDVLEF----NQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQ 307
D++ Q +IF ++ + L+ LL +H + Q +R F++ +
Sbjct: 342 -DIISCYSSGGQTIIFAETKVQVSELSGLLDGSR----ALHGEIPQSQREVTLAGFRNGK 396
Query: 306 KRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEND- 130
LVATN+ RG+DI V ++ + P + + Y+HR R GR G G+A+T+
Sbjct: 397 FATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYDSRKSS 456
Query: 129 -AKILNQVQDRFDVNITELPEEIELSTYIE 43
++I + +F+ P+EI S +E
Sbjct: 457 VSRIEKEAGIKFEHLAAPQPDEIARSGGME 486
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 63.3 bits (147), Expect = 1e-10
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Frame = -3
Query: 462 EFNQVVIFVKSVQRCIALAQLLT---DQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILV 292
E + +IF SV+ L +LL D A + Q R + F+ ++LV
Sbjct: 324 EGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLV 383
Query: 291 ATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISD 139
A++ RGMD++ V V NYDMP + T++HR R R G G T++S+
Sbjct: 384 ASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSN 434
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 63.3 bits (147), Expect = 1e-10
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 6/179 (3%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXH-GLQQHYVXXXXXXXXXX 487
P ++ + SAT ++ + + K +++ MEV E+K K GL Y+
Sbjct: 196 PKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQ 255
Query: 486 XXXXLDVLEFNQVVIFVKSVQRCI-----ALAQLLTDQNFPAIGIHRNMTQDERLSRYQQ 322
L + ++V+F + C+ L+++ T ++ H M Q R +
Sbjct: 256 LVHLLIENKNKKLVVFFMTCA-CVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALAS 314
Query: 321 FKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMI 145
F + +L+ T++ RG+DI ++ V YD P+D D ++HRV R R +G AI +
Sbjct: 315 FTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFL 373
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Frame = -3
Query: 456 NQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRI--LVATN 283
++V++F ++ A+ L++ + H + ++R+ ++FKD + LV T+
Sbjct: 371 SKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTD 430
Query: 282 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMIS 142
L RG+D++ V+ V +D P++S YLHR R R G KG +++S
Sbjct: 431 LAARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLVS 476
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/110 (28%), Positives = 53/110 (48%)
Frame = -3
Query: 453 QVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFG 274
+ ++F SV ++ LL + M Q RL +F+ + IL+AT+L
Sbjct: 504 RTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVA 563
Query: 273 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAK 124
RG+DI+ V + +Y +P ++ Y+HR R R G +I +I +K
Sbjct: 564 RGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNETSK 613
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain;
identical to cDNA DEAD box RNA helicase, RH26 GI:3776024
Length = 850
Score = 60.5 bits (140), Expect = 1e-09
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 6/180 (3%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPME-VYVDDEAKLKXHG--LQQHYVXXXXXXXX 493
P +Q + SAT+ +E+R +C ++ E + E + H Q + +
Sbjct: 566 PKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFS 625
Query: 492 XXXXXXLDVLEFN---QVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQ 322
+ + N +V+IF + +A LL+ + IH Q R +
Sbjct: 626 LLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDE 685
Query: 321 FKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMIS 142
F+ + ILV +++ RG+D V++V +P D + Y+HR+ R GR G +G + +++
Sbjct: 686 FRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLA 745
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/120 (25%), Positives = 64/120 (53%)
Frame = -3
Query: 465 LEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVAT 286
L+ V+ F+ ++ + L + + +H ++ + R + ++FK+ + ++LV
Sbjct: 405 LDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTN 464
Query: 285 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQ 106
L RG+D+ ++V N ++P D+ Y HR R GR G KG +T + +E+ I+ +++
Sbjct: 465 ELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVT-VCEESQVFIVKKME 523
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 60.1 bits (139), Expect = 1e-09
Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 2/198 (1%)
Frame = -3
Query: 651 QVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXL 472
QV++ SAT+S+E+ V ++ + V + + K Q
Sbjct: 292 QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILR 351
Query: 471 DVLEFNQ-VVIFVKSVQRCIALAQLLTD-QNFPAIGIHRNMTQDERLSRYQQFKDFQKRI 298
F V++V S LA +T A+ IH ER F + +
Sbjct: 352 SQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPV 411
Query: 297 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKIL 118
LV+T + GRG+D+ V V +DMP Y+H + RA R G KG AI + +E+D +
Sbjct: 412 LVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFV-NEDDRNLF 470
Query: 117 NQVQDRFDVNITELPEEI 64
+ + +P+E+
Sbjct: 471 PDLVAALKSSGAAIPKEL 488
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 60.1 bits (139), Expect = 1e-09
Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 2/198 (1%)
Frame = -3
Query: 651 QVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXL 472
QV++ SAT+S+E+ V ++ + V + + K Q
Sbjct: 155 QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILR 214
Query: 471 DVLEFNQ-VVIFVKSVQRCIALAQLLTD-QNFPAIGIHRNMTQDERLSRYQQFKDFQKRI 298
F V++V S LA +T A+ IH ER F + +
Sbjct: 215 SQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPV 274
Query: 297 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKIL 118
LV+T + GRG+D+ V V +DMP Y+H + RA R G KG AI + +E+D +
Sbjct: 275 LVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFV-NEDDRNLF 333
Query: 117 NQVQDRFDVNITELPEEI 64
+ + +P+E+
Sbjct: 334 PDLVAALKSSGAAIPKEL 351
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 59.3 bits (137), Expect = 2e-09
Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 6/193 (3%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVY--VDDEAKLKXHGLQQHY-VXXXXXXXX 493
P +Q + SAT+S E+R +C ++ E V + A + Q Y +
Sbjct: 264 PKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFS 323
Query: 492 XXXXXXLDVLEFN---QVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQ 322
+ N +V+IF + +A LL + IH Q R +
Sbjct: 324 LLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDE 383
Query: 321 FKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMIS 142
F+ + ILV +++ RG+D V++V +P D + Y+HR+ R GR G +G + +++
Sbjct: 384 FRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLA 443
Query: 141 DENDAKILNQVQD 103
+ L+ V+D
Sbjct: 444 PWEE-YFLSSVKD 455
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/99 (28%), Positives = 50/99 (50%)
Frame = -3
Query: 417 IALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVF 238
+ L+++ ++ I IH +M Q+ R F L+ T++ RG+DI ++ V
Sbjct: 292 LVLSKIPALKSISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVV 351
Query: 237 NYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKI 121
YD P+D + + HR R R G +G AI + + +A +
Sbjct: 352 QYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLPKEEAYV 390
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 56.0 bits (129), Expect = 2e-08
Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 7/181 (3%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQ------DPMEV-YVDDEAKLKXHGLQQHYVXXXX 505
P +Q ++ SAT+ KE+R V + ++ D + + V+ K+K + +
Sbjct: 560 PRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHFH 619
Query: 504 XXXXXXXXXXLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQ 325
++ ++ ++++F + + LL + IH Q R
Sbjct: 620 LVPHLLKEHINNMPDY-KIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSD 678
Query: 324 QFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMI 145
+FK+ + ILV +++ RGM+ V +V +P D + Y+HR+ R GR G G + +I
Sbjct: 679 EFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLI 738
Query: 144 S 142
+
Sbjct: 739 A 739
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/97 (27%), Positives = 48/97 (49%)
Frame = -3
Query: 462 EFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATN 283
E ++++ K +++ L D N A G H + +R+ + F + R++VAT
Sbjct: 485 EIRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATV 544
Query: 282 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 172
FG G+D V V ++ +P + Y+ + RAGR G
Sbjct: 545 AFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDG 581
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 54.8 bits (126), Expect = 5e-08
Identities = 28/104 (26%), Positives = 50/104 (48%)
Frame = -3
Query: 453 QVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFG 274
++++F + + LL + IH Q R +FK+ + ILV +++
Sbjct: 589 KIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSA 648
Query: 273 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMIS 142
RGM+ V +V +P D + Y+HR+ R GR G G + +I+
Sbjct: 649 RGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIA 692
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 48.4 bits (110), Expect(2) = 8e-08
Identities = 18/46 (39%), Positives = 32/46 (69%)
Frame = -3
Query: 273 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDE 136
RG+D ++V+ V N+DMP+ Y+HR+ R GR + G ++++IS +
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPD 443
Score = 25.4 bits (53), Expect(2) = 8e-08
Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
Frame = -3
Query: 663 PHGKQVMMXSATLSKEIRPVCKKFMQDPMEVYV---DDEAKLKXHGLQQHYVXXXXXXXX 493
P Q ++ SAT S ++ + K + +P+ + + +D+ + +QQ ++
Sbjct: 229 PRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKL 288
Query: 492 XXXXXXLDV-LEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFK 316
L + + +++IF+ ++ L L + ++ + Q+ RL +QF
Sbjct: 289 LHILALLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHILEQFN 348
Query: 315 DFQKRILVATN 283
L+AT+
Sbjct: 349 AGLFDYLIATD 359
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 54.0 bits (124), Expect = 9e-08
Identities = 29/131 (22%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Frame = -3
Query: 654 KQVMMXSATLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHY-VXXXXXXXXXXXXX 478
+Q ++ SAT +E+ + ++F++DP + + + Q +
Sbjct: 344 RQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTL 403
Query: 477 XLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRI 298
+++ ++++IFV++ + C + + L +PA+ IH + TQ ER +FK + I
Sbjct: 404 LKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPI 463
Query: 297 LVATNLFGRGM 265
+ AT++ RG+
Sbjct: 464 MTATDVAARGL 474
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/107 (25%), Positives = 51/107 (47%)
Frame = -3
Query: 453 QVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFG 274
+ ++F +V+ A+A +L + H+N DER + F++ + V T+
Sbjct: 426 RTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRE-TGGVFVCTDAAA 484
Query: 273 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 133
RG+D+ V+ V D + +LHR+ R R G G ++ ++ N
Sbjct: 485 RGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEAN 531
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = -3
Query: 300 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 178
+LV+T++ RG+D+ +FN+D+P+ YLHR RAGR
Sbjct: 394 LLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGR 434
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = -3
Query: 300 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 178
+LV+T++ RG+D+ +FN+D+P+ YLHR RAGR
Sbjct: 237 LLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGR 277
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Frame = -3
Query: 456 NQVVIFVKSVQRCIALAQLLT-----DQNFPAIGIHRNMTQDERLSRYQQFKDFQKR--- 301
++ +IF ++ C + + ++ + H ++Q+ RL+ Q+F Q
Sbjct: 636 SKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENS 695
Query: 300 -ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 163
LV T+ RG+D V+ V +D P D Y+ RV R R G +G
Sbjct: 696 LFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTAR-GARG 741
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/92 (25%), Positives = 45/92 (48%)
Frame = -3
Query: 447 VIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRG 268
+I+V + + + +A+ L A + ++ + +Q F D + +++VAT FG G
Sbjct: 501 IIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMG 560
Query: 267 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 172
+D + V + +Y + + Y RAGR G
Sbjct: 561 IDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDG 592
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/111 (20%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = -3
Query: 447 VIFVKSVQRCIALAQLLTDQ-NFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGR 271
+++ S C+ +A+ L ++ + H + +R+ ++++ + RI+ AT FG
Sbjct: 431 IVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGM 490
Query: 270 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKIL 118
G+D V V + + + ++Y RAGR G + I + ++ ++++
Sbjct: 491 GIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVV 541
>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 620
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/90 (24%), Positives = 44/90 (48%)
Frame = -3
Query: 447 VIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRG 268
+I+ C L+ L+ + H + R + + +K+I+VAT FG G
Sbjct: 167 IIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMG 226
Query: 267 MDIERVNIVFNYDMPEDSDTYLHRVARAGR 178
+D + V +V ++++P+ +++ RAGR
Sbjct: 227 IDKKDVRMVCHFNIPKSMESFYQESGRAGR 256
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/90 (24%), Positives = 44/90 (48%)
Frame = -3
Query: 447 VIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRG 268
+I+ C L+ L+ + H + R + + +K+I+VAT FG G
Sbjct: 260 IIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMG 319
Query: 267 MDIERVNIVFNYDMPEDSDTYLHRVARAGR 178
+D + V +V ++++P+ +++ RAGR
Sbjct: 320 IDKKDVRMVCHFNIPKSMESFYQESGRAGR 349
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/92 (23%), Positives = 45/92 (48%)
Frame = -3
Query: 447 VIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRG 268
+++ S + C +A L ++ A H +M + R + ++ + +++V T FG G
Sbjct: 317 IVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMG 376
Query: 267 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 172
++ V V ++ + + +TY RAGR G
Sbjct: 377 INKPDVRFVIHHSLSKSMETYYQESGRAGRDG 408
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/73 (27%), Positives = 39/73 (53%)
Frame = -3
Query: 369 IHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 190
++R++ + R S ++FK+ R+LV L G++ +++ + ++P D+ Y HR
Sbjct: 645 LNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELPTDAVHYAHRAG 704
Query: 189 RAGRFGTKGLAIT 151
R R G K +T
Sbjct: 705 RMRRPGRKMTVVT 717
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory / CAF
identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 40.3 bits (90), Expect = 0.001
Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Frame = -3
Query: 453 QVVIFVKSVQRCIALAQLLTDQNFPAIGIHR-------NMTQDERLSRYQ----QFKDFQ 307
+ ++FV+ V + L ++ + P++ R N +Q+ + S+ Q +F+D
Sbjct: 666 RAIVFVERVVAALVLPKVFAE--LPSLSFIRCASMIGHNNSQEMKSSQMQDTISKFRDGH 723
Query: 306 KRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDA 127
+LVAT++ G+DI + N+V +D+ + Y+ RA + G+ + + + + A
Sbjct: 724 VTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNVSHA 783
Query: 126 KILNQVQDRFDVNITELPEEIELS 55
L ++ + E E +LS
Sbjct: 784 AFLRNARNSEETLRKEAIERTDLS 807
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 36.3 bits (80), Expect = 0.018
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Frame = -3
Query: 375 IGIHRNMTQDERLSRYQQFKDFQKR---ILVATNLFGRGMDIERVNIVFNYDMPEDSDTY 205
+G+ + R S K FQ + +LVAT + G+DI+ +V YD+PE ++
Sbjct: 546 VGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSF 605
Query: 204 LHRVARAGRFGTKGLAITMISDENDAKILNQV---QDRFDVNIT 82
+ RA ++ + +E + ++ +DR ++ IT
Sbjct: 606 IQSRGRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEIT 649
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 33.9 bits (74), Expect = 0.098
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = -3
Query: 369 IHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV- 193
+H M D++ +F+ + +IL++T + G+D+ +++ + LH++
Sbjct: 802 LHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLR 861
Query: 192 ARAGRFGTKGLAITMISDENDAKILNQV 109
R GR K + + S N K LN +
Sbjct: 862 GRVGRGTRKSKCLLVGSSTNSLKRLNML 889
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 33.1 bits (72), Expect = 0.17
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Frame = -3
Query: 465 LEFNQVVIFVKSVQRCIALAQLLTD-----QNFPA---IGIHRNMTQDERLSRYQQFKDF 310
LE + +IFV V I L LL + N+ G + + R + + +DF
Sbjct: 383 LENIRCIIFVDRVITAIVLESLLAEILPNCNNWKTKYVAGNNSGLQNQTRKKQNEIVEDF 442
Query: 309 QK---RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARA 184
++ I+VAT++ G+D++ N+V +D + +++ RA
Sbjct: 443 RRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGRA 487
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 31.1 bits (67), Expect = 0.69
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = -3
Query: 393 DQNFPAIGI---HRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMP 223
++ FP I I H + ++F + +IL+ TN+ G+DI+ N + D+
Sbjct: 501 EEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQ 560
Query: 222 EDSDTYLHRV-ARAGRFGTKGLAITMISDEN 133
+ L+++ R GR + A D++
Sbjct: 561 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 591
>At4g37020.1 68417.m05244 expressed protein
Length = 212
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/77 (22%), Positives = 32/77 (41%)
Frame = -3
Query: 294 VATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILN 115
V L G ++ NY++P +TY R+ + G+ I M+ + L
Sbjct: 135 VCLPLLSSGESSLSARVLINYELPTKKETYTRRITTC--LASGGIVINMVVG-GEVTTLK 191
Query: 114 QVQDRFDVNITELPEEI 64
+++ + I E+P I
Sbjct: 192 SLEESSGILIAEMPINI 208
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -3
Query: 327 QQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 178
++F+ ++VAT++ G+DI V++V +D + R+ R GR
Sbjct: 521 EKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 570
>At1g34300.1 68414.m04256 lectin protein kinase family protein
contains Pfam domains, PF01453: Lectin (probable mannose
binding) and PF00069: Protein kinase domain
Length = 829
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3
Query: 345 HPGSYFCGYQW 377
HPGS+F GYQW
Sbjct: 377 HPGSFFTGYQW 387
>At5g62510.1 68418.m07845 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 420
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 307 LEVLELLIAGETLILGHISVDTNGREVLVSEQLCQSYAALY*FHKNNHL--IELQ 465
L+ +L + + L + NG VLV LC + LY + NHL +E+Q
Sbjct: 334 LQPCQLHLVDNDIPLTLVDTTQNGEVVLVPSDLCSPFYILYYDIQKNHLRKVEIQ 388
>At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA
helicase, putative nearly identical to HUA enhancer 2
[Arabidopsis thaliana] GI:16024936
Length = 995
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Frame = -3
Query: 321 FKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDT--------YLHRVARAGRFG-- 172
F++ + L AT F G+++ +VF D D+ Y+ RAGR G
Sbjct: 421 FQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD 480
Query: 171 TKGLAITMISDENDAKILNQV 109
+G+ I MI ++ + L +
Sbjct: 481 ERGICIIMIDEQMEMNTLRDM 501
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,029,058
Number of Sequences: 28952
Number of extensions: 283782
Number of successful extensions: 684
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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