Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D07
         (409 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   2.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.7  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   6.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   8.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   8.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   8.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   8.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    20   8.1  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 177 NFKCAYASYCFGKFWSNIVWES 112
           N    Y  Y FGKF   ++ +S
Sbjct: 138 NISATYICYAFGKFSCKVMIQS 159


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 177 NFKCAYASYCFGKFWSNIVWES 112
           N    Y  Y FGKF   ++ +S
Sbjct: 371 NISATYICYAFGKFSCKVMIQS 392


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 177 NFKCAYASYCFGKFWSNIVWES 112
           N    Y  Y FGKF   ++ +S
Sbjct: 371 NISATYICYAFGKFSCKVMIQS 392


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 267 HKNRFLKFCR 296
           HK ++ KFCR
Sbjct: 30  HKEKYRKFCR 39


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 177 NFKCAYASYCFGKFWSNIV 121
           N   +Y +Y FGKF   I+
Sbjct: 384 NIFASYFAYIFGKFACKIM 402


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 177 NFKCAYASYCFGKFWSNIV 121
           N   +Y +Y FGKF   I+
Sbjct: 384 NIFASYFAYIFGKFACKIM 402


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 177 NFKCAYASYCFGKFWSNIV 121
           N   +Y +Y FGKF   I+
Sbjct: 384 NIFASYFAYIFGKFACKIM 402


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 177 NFKCAYASYCFGKFWSNIV 121
           N   +Y +Y FGKF   I+
Sbjct: 384 NIFASYFAYIFGKFACKIM 402


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 174 FKCAYASYCFGKFWSNIVWESCC*ERGIC 88
           F C      FG+ ++NI   S C   G C
Sbjct: 20  FTCEGCKSFFGRTYNNISSISECKNNGEC 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,124
Number of Sequences: 336
Number of extensions: 1495
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)