Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D07
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    29   0.28 
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   2.6  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    26   2.6  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.9  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    24   7.9  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    24   7.9  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +2

Query: 191  HS*IFQ*FQLIQMEGLQICSCIFLSTQESFSEILSVEIYET*MMMMD--LLNWVL 349
            H  I Q  +++Q+ GL  C+ + L+  E+F  +LS++ Y    +  D  LL WVL
Sbjct: 1991 HEDIRQDERVMQLFGL--CNNLLLADPETFKRLLSIQRYPVIPLSPDSGLLGWVL 2043


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 254 YKNKSEVPPFVSAEIIERSKSEARIKIS 171
           +K+  EVP FV   +++R      IK+S
Sbjct: 477 FKHTPEVPEFVQNRVLQRGDRHQSIKVS 504


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 248 SCIFLSTQESFSEILSVEIYE 310
           +CIF+ T  SF E+LS   YE
Sbjct: 135 TCIFIYTVSSFIELLSEPYYE 155


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 242 ICSCIFLSTQESFSEILSVEI 304
           +C C+FLS   S S +LS+ I
Sbjct: 161 LCVCVFLSFLFSLSHLLSLAI 181


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 290 EFQKTILVWTKKYKNKSEVPPFVSAEIIERS 198
           +FQ   L W  +Y +  +  P ++AE +++S
Sbjct: 457 DFQNQALYWISRYISTMKYNPELAAETLKKS 487


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 129 CSKTCQSSKKHKHI*NFDSSFTLRSFNNFS*YKWRDFRFV 248
           C K  +SS  +K I N+  + +LR + +   + W D+  +
Sbjct: 293 CLKESESSDAYKLIYNWQFTLSLRFWLHVISFLWNDYESI 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,466
Number of Sequences: 5004
Number of extensions: 24415
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)