Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D07
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0490 + 22672241-22674679                                         27   5.7  
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    23   6.3  

>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 96  PSLSSSFPRQYCSKTCQSSKKHKHI*NFDSSFTLRSFNNFS*YKWR 233
           PS+++S    YC+    ++K  K I  F +  TL   N++   KW+
Sbjct: 716 PSVTASPAPAYCASPDVNAKADKFIERFRAGLTLEKINSYR-EKWQ 760


>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 23.0 bits (47), Expect(2) = 6.3
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 361 HLHRQDPVQQVHHHH 317
           H H Q    Q HHHH
Sbjct: 158 HHHSQPQQPQSHHHH 172



 Score = 22.2 bits (45), Expect(2) = 6.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 328 HHHHLCLID 302
           HHHHL ++D
Sbjct: 196 HHHHLVVVD 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,889,554
Number of Sequences: 37544
Number of extensions: 149827
Number of successful extensions: 433
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)