Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D07
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34256| Best HMM Match : CRA_rpt (HMM E-Value=4)                     28   3.4  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               24   3.9  
SB_53936| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_24396| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_34256| Best HMM Match : CRA_rpt (HMM E-Value=4)
          Length = 171

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 105 SSSFPRQYCSKTCQSSKKHKHI*NFDSSFTLRSFNNFS*YKWRDFRFVLVFFCPHKNRFL 284
           +SS  + YC+K+C S+ + + I    ++    S       + R+  FV+   CP + + L
Sbjct: 94  NSSEDQDYCTKSCSSTDEVQEISTPPAARIKPSARKLPEKQKREDAFVMTELCPARRKSL 153

Query: 285 KF 290
            F
Sbjct: 154 LF 155


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 23.8 bits (49), Expect(2) = 3.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 355 HRQDPVQQVHHHHL 314
           HR  P+   HHHHL
Sbjct: 111 HRYHPLCHHHHHHL 124



 Score = 22.2 bits (45), Expect(2) = 3.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 328 HHHHLC 311
           HHHHLC
Sbjct: 126 HHHHLC 131


>SB_53936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 314 MSHRFRPTEFQKTILVWTKKYKNKSEVPPFVSAEIIER-SKSEAR 183
           MS  +R  E +  + VWT++YK      P V A ++ R ++ E R
Sbjct: 7   MSILYRCVEERLKLRVWTRRYKGLRIGKPVVPAALMNRPTRGERR 51


>SB_24396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 394 DVARFILGRCVHLHRQDPVQQVHH-HHLCLIDFDRQNFRKRFLCGQ 260
           D A F+   CV+ HR+  V + H    L  +  DRQ   +   C Q
Sbjct: 112 DCAEFLCTNCVYAHRRIRVTKDHRILSLDTLQADRQTLHRPSFCMQ 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,285,636
Number of Sequences: 59808
Number of extensions: 176197
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)