Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D07
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66523-6|CAA91415.1|  161|Caenorhabditis elegans Hypothetical pr...    33   0.10 
Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical p...    30   0.56 
AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear recep...    30   0.56 
AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear recep...    30   0.56 
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   1.7  
Z49132-5|CAA88984.1|  396|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    26   9.1  
AL031627-8|CAA20960.2|  222|Caenorhabditis elegans Hypothetical ...    26   9.1  

>Z66523-6|CAA91415.1|  161|Caenorhabditis elegans Hypothetical
           protein M05D6.6 protein.
          Length = 161

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 296 PTEFQKTILVWTKKYKNKSEVPPFVSAEIIERSKSEARI 180
           PT++Q+  LV TK Y + +++PP+V    + R     R+
Sbjct: 85  PTKWQRKFLVITKLYPSAADIPPYVHHGTMNRMHDRMRV 123


>Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical
           protein K06B4.11 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 66  PVKIHLMNRFPSLSSSFPRQYCSKTCQSSKKH 161
           P   HL+N F S SS  P  YC   C+ +  H
Sbjct: 2   PSPTHLLNNFESSSSQGPPSYCLICCEVADGH 33


>AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 365

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 66  PVKIHLMNRFPSLSSSFPRQYCSKTCQSSKKH 161
           P   HL+N F S SS  P  YC   C+ +  H
Sbjct: 3   PSPTHLLNNFESSSSQGPPSYCLICCEVADGH 34


>AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 366

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 66  PVKIHLMNRFPSLSSSFPRQYCSKTCQSSKKH 161
           P   HL+N F S SS  P  YC   C+ +  H
Sbjct: 4   PSPTHLLNNFESSSSQGPPSYCLICCEVADGH 35


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 242  SEVPPFVSAEIIERSKSEARIKISNVLMLLTALASFGAILSGKAAAKRG 96
            S++ PF+   I +    + R   +NVLMLL+++   G    G+  A+ G
Sbjct: 1082 SDMKPFMMTLIKDYLSEDVRFSTNNVLMLLSSIHPIGTSF-GRVTAESG 1129


>Z49132-5|CAA88984.1|  396|Caenorhabditis elegans Hypothetical
           protein ZK666.5 protein.
          Length = 396

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 308 HRFRPTEFQKTILVWTKKYKNKSEVPPFVSAEIIERS 198
           H F    +QK ++V+   YK   ++ P   A+ ++ S
Sbjct: 139 HGFNRAHYQKVVIVYASTYKGSGDLNPVPVAQRLKTS 175


>Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical
           protein F49C5.9 protein.
          Length = 376

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 227 FVSAEIIERSKSEARIKISNVLMLLTALASFGAILSGKAA 108
           FV+  I+ ++ S  +I+  N+L+    LA FG  L   A+
Sbjct: 47  FVTILIVWKASSRLKIEYRNILLSQLVLAFFGCFLVSLAS 86


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
 Frame = -3

Query: 305 RFRPTEFQKTILVWTKKYKNKSEVPPFVSAEIIERSKSEA-----RIKISNVLMLLTALA 141
           R R  E Q      TKK K   EVP   S+++ +RSK          K S +L      +
Sbjct: 256 RRRAKEDQNVKARKTKKVKKNEEVPSKKSSKMSKRSKRSTDENLETAKSSRILKDSEPKS 315

Query: 140 SFGAILSGKAAAKRGES 90
           S  ++ S K  + RG S
Sbjct: 316 SRSSVTSQKIDSSRGMS 332


>AL031627-8|CAA20960.2|  222|Caenorhabditis elegans Hypothetical
           protein Y102A5C.17 protein.
          Length = 222

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 196 RVKLESKFQMCLCFLLL 146
           R+KL S + +C+CF +L
Sbjct: 18  RIKLRSSYMICVCFFVL 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,925,580
Number of Sequences: 27780
Number of extensions: 142902
Number of successful extensions: 379
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)