Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_D05
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 107 2e-24
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 99 6e-22
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 4.1
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 26 5.4
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 26 7.1
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 26 7.1
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.4
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 107 bits (256), Expect = 2e-24
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Frame = -3
Query: 473 PFXLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCT 294
P LLL+ N ++K Y + + +G FQ+QDD++DCFGD GKVG DIQ+ KCT
Sbjct: 205 PIKCALLLSRNSNQKAYDTTIKLSKLLGYYFQVQDDYLDCFGDYTVLGKVGMDIQDNKCT 264
Query: 293 WLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 114
WL A + + Q + +A YG + ++ IK+LY +L +P++Y E M D+I ++
Sbjct: 265 WLVCYAEKFASADQLNLLRAHYGKAGSENIAVIKQLYHELQIPELYHKFEDDMVDSISKE 324
Query: 113 IENI--TIEAARVLFKKLLDITYNR 45
I+ I + + +F K + Y R
Sbjct: 325 IDLIDESTGLKKCIFTKFFQLIYKR 349
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -2
Query: 762 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNETLWRTSMGQ 583
RG+ CWY VG+ A +S L+ + + FR P Y+ + + F E + T +GQ
Sbjct: 110 RGLDCWYL--VVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQ 167
Query: 582 HLD 574
D
Sbjct: 168 QED 170
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 99.1 bits (236), Expect = 6e-22
Identities = 44/124 (35%), Positives = 74/124 (59%)
Frame = -3
Query: 473 PFXLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCT 294
P L + LA + K AQDI + +G FQ+QDD++DC+GD TGK+GTDI + KC+
Sbjct: 201 PVALAMHLAGVATPENLKCAQDILIILGKYFQVQDDYLDCYGDPTVTGKIGTDILDNKCS 260
Query: 293 WLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 114
W+ AL +CT QR + YG + +R+K ++E+L++ +++ E++ I +
Sbjct: 261 WIINLALAKCTPEQRVILDDNYGRKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKL 320
Query: 113 IENI 102
I+ +
Sbjct: 321 IDGV 324
Score = 60.9 bits (141), Expect = 2e-10
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = -2
Query: 762 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNETLWRTSMGQ 583
RG PCWY P VG A D+ ++ S+++ +FR Y+ + ELF++ ++T +GQ
Sbjct: 105 RGQPCWYLMPGVG-NIAINDAFMVESAIYFLLKKHFRQESCYVDLIELFHDVTFQTELGQ 163
Query: 582 HLDHVTG-NRKTDYSSFTLDR 523
LD +T D S F+L +
Sbjct: 164 QLDLLTAPEDSVDLSKFSLQK 184
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 395 FPSKCLEQIYKFFHPHFQPIVNPGXTGKL*V*YAALY 505
F S QI FHP F IV P +GK V A L+
Sbjct: 134 FKSYAGTQIVGPFHPSFSSIVGPNGSGKSNVIDALLF 170
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -3
Query: 395 IGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSS 219
IGT FQ+ DD +D + GK G D++ T + A ++ E + +
Sbjct: 262 IGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNR---FN 318
Query: 218 EPAHVERIKRLYE 180
P+ ++R + L E
Sbjct: 319 HPSDIQRARSLVE 331
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -3
Query: 206 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 114
++R ++ E++H+PQ+Y + Y I +Q
Sbjct: 130 IDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQ 160
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 413 QDICLEIGTMFQIQDDFIDCFGDE 342
Q +C+ IG M DDF D + DE
Sbjct: 307 QSVCIAIGAMAHGPDDFSDGWVDE 330
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 445 KMWMKKFINLLKTFAWK*ERCS 380
K +K+F NLLKTFA + ER +
Sbjct: 93 KRRIKRFRNLLKTFACRIERAN 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,142
Number of Sequences: 5004
Number of extensions: 64655
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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