Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D05
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)   110   1e-24
SB_49950| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-29)                 29   5.7  
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)                     28   10.0 

>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
          Length = 303

 Score =  110 bits (265), Expect = 1e-24
 Identities = 56/132 (42%), Positives = 79/132 (59%)
 Frame = -3

Query: 437 DEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTE 258
           DE  + +A+ I LE+G  FQIQDD+ID FGD   TGKVGTDI+E KCTWL VQAL+R   
Sbjct: 171 DEASHANAKIILLEMGEFFQIQDDYIDVFGDASVTGKVGTDIEEGKCTWLVVQALKRANA 230

Query: 257 AQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENITIEAARVL 78
            Q T+ K   G ++     ++KR+Y +L+L Q++   E+A Y  II  I   + +    +
Sbjct: 231 QQLTIIKENLGINDIEASAKVKRVYRELNLEQVFHEYEEASYQRIIDLISKHSGDLPDEV 290

Query: 77  FKKLLDITYNRQ 42
           F   +   Y R+
Sbjct: 291 FLDFVRKIYKRK 302



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = -2

Query: 762 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNE 610
           RG PCWYR+PEVG   A  D ++I  ++F     + +    Y+ + ELF+E
Sbjct: 117 RGQPCWYRQPEVG-NIAINDGIMIEQTVFRLLKKHIKHQSYYVDVVELFHE 166


>SB_49950| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-29)
          Length = 349

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 162 LREVKVFVKSFYAFHMCWFTATITGFEYCT 251
           LR V VF+    A+  CW    I  F+Y T
Sbjct: 229 LRTVTVFILMLCAYLFCWLPNAIVRFQYST 258


>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
          Length = 1447

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 267 ALQRLNCQPSTFALLYICTNFTSFYFITEAVYEIVLNLEHRSYFQANVLSRFINFFIHIF 446
           AL R   + S  AL  + T  T   F+TE+ Y++++   +++Y     L      +I +F
Sbjct: 69  ALIRGRHKHSREALTQVYTVLTEVPFVTESTYDVIIKAGYQAYGGRKALGYHQRMWILLF 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,881,429
Number of Sequences: 59808
Number of extensions: 472542
Number of successful extensions: 1127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)