Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_D05
(793 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 121 3e-27
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 121 3e-27
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 121 3e-27
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 121 3e-27
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 121 3e-27
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 106 1e-22
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 103 6e-22
M87434-1|AAA60607.1| 727|Homo sapiens 71 kDa 2'5' oligoadenylat... 30 8.3
M87284-1|AAA60606.1| 687|Homo sapiens 2'5' oligoadenylate synth... 30 8.3
BC049215-1|AAH49215.1| 687|Homo sapiens 2'-5'-oligoadenylate sy... 30 8.3
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 121 bits (291), Expect = 3e-27
Identities = 60/144 (41%), Positives = 81/144 (56%)
Frame = -3
Query: 473 PFXLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCT 294
P + +A EK + +A+ I LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+
Sbjct: 202 PIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCS 261
Query: 293 WLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 114
WL VQ LQR T Q + K YG E V R+K LYE+L LP ++ E+ Y +I+
Sbjct: 262 WLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMAL 321
Query: 113 IENITIEAARVLFKKLLDITYNRQ 42
IE +F L Y R+
Sbjct: 322 IEQYAAPLPPAVFLGLARKIYKRR 345
Score = 53.2 bits (122), Expect = 1e-06
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = -2
Query: 762 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNETLWRTSMGQ 583
RG CWY++P VG+ A D+ L+ + ++ R P Y+ + ELF ++ ++T +GQ
Sbjct: 106 RGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQ 164
Query: 582 HLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPV 469
LD +T + D FT R + LP+
Sbjct: 165 TLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI 203
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 121 bits (291), Expect = 3e-27
Identities = 60/144 (41%), Positives = 81/144 (56%)
Frame = -3
Query: 473 PFXLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCT 294
P + +A EK + +A+ I LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+
Sbjct: 209 PIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCS 268
Query: 293 WLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 114
WL VQ LQR T Q + K YG E V R+K LYE+L LP ++ E+ Y +I+
Sbjct: 269 WLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMAL 328
Query: 113 IENITIEAARVLFKKLLDITYNRQ 42
IE +F L Y R+
Sbjct: 329 IEQYAAPLPPAVFLGLARKIYKRR 352
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = -2
Query: 762 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNETLWRTSMGQ 583
RG CWY++P VG+ A D+ L+ + ++ R P Y+ + ELF ++ ++T +GQ
Sbjct: 113 RGQTCWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQ 171
Query: 582 HLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPV 469
LD +T + D FT R + LP+
Sbjct: 172 TLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI 210
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 121 bits (291), Expect = 3e-27
Identities = 60/144 (41%), Positives = 81/144 (56%)
Frame = -3
Query: 473 PFXLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCT 294
P + +A EK + +A+ I LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+
Sbjct: 276 PIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCS 335
Query: 293 WLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 114
WL VQ LQR T Q + K YG E V R+K LYE+L LP ++ E+ Y +I+
Sbjct: 336 WLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMAL 395
Query: 113 IENITIEAARVLFKKLLDITYNRQ 42
IE +F L Y R+
Sbjct: 396 IEQYAAPLPPAVFLGLARKIYKRR 419
Score = 53.2 bits (122), Expect = 1e-06
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = -2
Query: 762 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNETLWRTSMGQ 583
RG CWY++P VG+ A D+ L+ + ++ R P Y+ + ELF ++ ++T +GQ
Sbjct: 180 RGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQ 238
Query: 582 HLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPV 469
LD +T + D FT R + LP+
Sbjct: 239 TLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI 277
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 121 bits (291), Expect = 3e-27
Identities = 60/144 (41%), Positives = 81/144 (56%)
Frame = -3
Query: 473 PFXLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCT 294
P + +A EK + +A+ I LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+
Sbjct: 275 PIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCS 334
Query: 293 WLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 114
WL VQ LQR T Q + K YG E V R+K LYE+L LP ++ E+ Y +I+
Sbjct: 335 WLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMAL 394
Query: 113 IENITIEAARVLFKKLLDITYNRQ 42
IE +F L Y R+
Sbjct: 395 IEQYAAPLPPAVFLGLARKIYKRR 418
Score = 53.2 bits (122), Expect = 1e-06
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = -2
Query: 762 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNETLWRTSMGQ 583
RG CWY++P VG+ A D+ L+ + ++ R P Y+ + ELF ++ ++T +GQ
Sbjct: 179 RGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQ 237
Query: 582 HLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPV 469
LD +T + D FT R + LP+
Sbjct: 238 TLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI 276
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 121 bits (291), Expect = 3e-27
Identities = 60/144 (41%), Positives = 81/144 (56%)
Frame = -3
Query: 473 PFXLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCT 294
P + +A EK + +A+ I LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+
Sbjct: 275 PIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCS 334
Query: 293 WLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 114
WL VQ LQR T Q + K YG E V R+K LYE+L LP ++ E+ Y +I+
Sbjct: 335 WLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMAL 394
Query: 113 IENITIEAARVLFKKLLDITYNRQ 42
IE +F L Y R+
Sbjct: 395 IEQYAAPLPPAVFLGLARKIYKRR 418
Score = 53.2 bits (122), Expect = 1e-06
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = -2
Query: 762 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNETLWRTSMGQ 583
RG CWY++P VG+ A D+ L+ + ++ R P Y+ + ELF ++ ++T +GQ
Sbjct: 179 RGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQ 237
Query: 582 HLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPV 469
LD +T + D FT R + LP+
Sbjct: 238 TLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI 276
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 106 bits (254), Expect = 1e-22
Identities = 55/132 (41%), Positives = 72/132 (54%)
Frame = -3
Query: 440 VDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCT 261
V EK + +A I LE+G QIQDD+++ FGD TGK+GTDIQ+ KC L VQ L R T
Sbjct: 215 VXEKEHANAXKILLEMGEFSQIQDDYLELFGDPSVTGKIGTDIQDXKCNCLXVQCLXRAT 274
Query: 260 EAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENITIEAARV 81
Q + K YG E V R+K LYE+L LP ++ E+ Y +I+ IE
Sbjct: 275 PEQYQILKENYGQKEAEKVPRVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPA 334
Query: 80 LFKKLLDITYNR 45
+F L Y R
Sbjct: 335 VFLGLARQIYKR 346
Score = 53.2 bits (122), Expect = 1e-06
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = -2
Query: 762 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNETLWRTSMGQ 583
RG CWY++P VG+ A D+ L+ + ++ R P Y+ + ELF ++ ++T +GQ
Sbjct: 108 RGQICWYQKPGVGLD-AIDDANLLEACIYPLLKLYCREQPYYLNLIELFLQSSYQTEIGQ 166
Query: 582 HLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPV 469
LD +T + D FT R LP+
Sbjct: 167 TLDLLTXPQGNVDLVRFTEKRYISIVKYKTALSSSYLPI 205
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 103 bits (248), Expect = 6e-22
Identities = 50/122 (40%), Positives = 70/122 (57%)
Frame = -3
Query: 473 PFXLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCT 294
P + ++ D+K + SA+ I LEI FQIQDD++D GD TG+VG D Q+ KC+
Sbjct: 177 PVAAAMYMSRMDDKKEHTSAKKILLEIQEFFQIQDDYLDFSGDPSVTGRVGNDFQDNKCS 236
Query: 293 WLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 114
WL VQ L + T Q + K Y E V R+K LYE+L LP ++ EK Y +++
Sbjct: 237 WLVVQCLLQATPEQYQILKENYRQKEAEKVARVKALYEELDLPAVFLQYEKDSYSHVMGL 296
Query: 113 IE 108
IE
Sbjct: 297 IE 298
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = -2
Query: 762 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNETLWRTSMGQ 583
+G WY++ +G+ A D++L+ + ++ R P Y+ + ELF + ++T +GQ
Sbjct: 81 QGQISWYQKLGMGLD-AINDAILLEACIYCLLKLYCREQPYYLNLMELFQQNSYQTEIGQ 139
Query: 582 HLDHVT 565
LD +T
Sbjct: 140 TLDLIT 145
>M87434-1|AAA60607.1| 727|Homo sapiens 71 kDa 2'5' oligoadenylate
synthetase protein.
Length = 727
Score = 30.3 bits (65), Expect = 8.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 325 LVQIYKSANVLGWQFKRCSAVLKHNVQYSKP 233
L+ +YKS+++ G +F C VL+ N S+P
Sbjct: 506 LIDLYKSSDLPGGEFSTCFTVLQRNFIRSRP 536
>M87284-1|AAA60606.1| 687|Homo sapiens 2'5' oligoadenylate
synthetase protein.
Length = 687
Score = 30.3 bits (65), Expect = 8.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 325 LVQIYKSANVLGWQFKRCSAVLKHNVQYSKP 233
L+ +YKS+++ G +F C VL+ N S+P
Sbjct: 506 LIDLYKSSDLPGGEFSTCFTVLQRNFIRSRP 536
>BC049215-1|AAH49215.1| 687|Homo sapiens 2'-5'-oligoadenylate
synthetase 2, 69/71kDa protein.
Length = 687
Score = 30.3 bits (65), Expect = 8.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 325 LVQIYKSANVLGWQFKRCSAVLKHNVQYSKP 233
L+ +YKS+++ G +F C VL+ N S+P
Sbjct: 506 LIDLYKSSDLPGGEFSTCFTVLQRNFIRSRP 536
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,157,817
Number of Sequences: 237096
Number of extensions: 2250269
Number of successful extensions: 4382
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4376
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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