Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D05
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   7.5  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   7.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.9  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = -3

Query: 224 SSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENITI 96
           S EP  +  +   Y+  +      + +K  Y N I  IE I +
Sbjct: 76  SKEPKIISSLSNNYKYSNYNNYNNYNKKLYYKNYIINIEQIPV 118


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 371 DDFIDCFGDEIKTGKVGTDI 312
           DDF+   G  I T KVG+ +
Sbjct: 18  DDFMKALGVGIMTRKVGSSV 37


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 493 CGLVFYNSVVTIQSK*RIVCFSI 561
           CGL F + +++ Q    I+C +I
Sbjct: 655 CGLRFEDPMISFQPGDTIICINI 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,484
Number of Sequences: 438
Number of extensions: 4748
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)