Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D04
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.50 
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   2.6  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   4.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   4.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   4.6  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   4.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   4.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   4.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   4.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   4.6  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   4.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   4.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 600  WTSPSSRXTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPS 484
            W+S ++   W  T    +  +R   +S   RPT  ++P+
Sbjct: 1043 WSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPT 1081



 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 561  PVSTSHWSRTRQSSLPRRPT 502
            P +T+HW     +S   RPT
Sbjct: 1177 PSTTNHWQTKTTTSTTTRPT 1196



 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 348  PSKPSVLSNSSTGVQPVSRSVSTTSHP 268
            P+KPS    S+T       + STT+ P
Sbjct: 1169 PTKPSYRPPSTTNHWQTKTTTSTTTRP 1195


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/63 (20%), Positives = 24/63 (38%)
 Frame = -1

Query: 567 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTV 388
           L P  TS     R         + +   PR +   +       N   ++ +TW+++ C  
Sbjct: 258 LHPAETSMNDANRNDCAKPLTQIRNIRGPRKRLRFAYVTRTGANIKKLIVNTWISLFCVK 317

Query: 387 VTS 379
           VT+
Sbjct: 318 VTN 320


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -1

Query: 516 PRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKP 337
           P+R       SP +QTH S+   ++ ++T   +ST +A    + T+     + P L +  
Sbjct: 78  PQRLASTHLQSPNTQTHPSA-SCKYADST---SSTGVASPQDLSTNGAPPRSTPPLSTPS 133

Query: 336 SVLSNSSTGV-QPVSRSVSTTSHP 268
           +  +  S+G+  P+S S S    P
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKP 157


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -1

Query: 516 PRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKP 337
           P+R       SP +QTH S+   ++ ++T   +ST +A    + T+     + P L +  
Sbjct: 78  PQRLASTHLQSPNTQTHPSA-SCKYADST---SSTGVASPQDLSTNGAPPRSTPPLSTPS 133

Query: 336 SVLSNSSTGV-QPVSRSVSTTSHP 268
           +  +  S+G+  P+S S S    P
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKP 157


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -1

Query: 516 PRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKP 337
           P+R       SP +QTH S+   ++ ++T   +ST +A    + T+     + P L +  
Sbjct: 78  PQRLASTHLQSPNTQTHPSA-SCKYADST---SSTGVASPQDLSTNGAPPRSTPPLSTPS 133

Query: 336 SVLSNSSTGV-QPVSRSVSTTSHP 268
           +  +  S+G+  P+S S S    P
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKP 157


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 411 WLAVCCTVVTSYPRM 367
           W  VC  VV  YPR+
Sbjct: 166 WREVCTFVVQVYPRL 180


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -1

Query: 516 PRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKP 337
           P+R       SP +QTH S+   ++ ++T   +ST +A    + T+     + P L +  
Sbjct: 78  PQRLASTHLQSPNTQTHPSA-SCKYADST---SSTGVASPQDLSTNGAPPRSTPPLSTPS 133

Query: 336 SVLSNSSTGV-QPVSRSVSTTSHP 268
           +  +  S+G+  P+S S S    P
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKP 157


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -1

Query: 516 PRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKP 337
           P+R       SP +QTH S+   ++ ++T   +ST +A    + T+     + P L +  
Sbjct: 78  PQRLASTHLQSPNTQTHPSA-SCKYADST---SSTGVASPQDLSTNGAPPRSTPPLSTPS 133

Query: 336 SVLSNSSTGV-QPVSRSVSTTSHP 268
           +  +  S+G+  P+S S S    P
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKP 157


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -1

Query: 516 PRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKP 337
           P+R       SP +QTH S+   ++ ++T   +ST +A    + T+     + P L +  
Sbjct: 34  PQRLASTHLQSPNTQTHPSA-SCKYADST---SSTGVASPQDLSTNGAPPRSTPPLSTPS 89

Query: 336 SVLSNSSTGV-QPVSRSVSTTSHP 268
           +  +  S+G+  P+S S S    P
Sbjct: 90  NSNATKSSGLTSPLSVSTSPPGKP 113


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 446 LVGGLEACVCDLG 484
           L+GG  +C CDLG
Sbjct: 703 LMGGKWSCDCDLG 715


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 391 GTAYSKPCTCHDGGRISPSG 450
           G A++ P   HD G  SP G
Sbjct: 50  GNAHTGPTGTHDAGFPSPRG 69


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -1

Query: 516 PRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKP 337
           P+R       SP +QTH S+   ++ ++T   +ST +A    + T+     + P L +  
Sbjct: 78  PQRLASTHLQSPNTQTHPSA-SCKYADST---SSTGVASPQDLSTNGAPPRSTPPLSTPS 133

Query: 336 SVLSNSSTGV-QPVSRSVSTTSHP 268
           +  +  S+G+  P+S S S    P
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKP 157


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -1

Query: 516 PRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKP 337
           P+R       SP +QTH S+   ++ ++T   +ST +A    + T+     + P L +  
Sbjct: 78  PQRLASTHLQSPNTQTHPSA-SCKYADST---SSTGVASPQDLSTNGAPPRSTPPLSTPS 133

Query: 336 SVLSNSSTGV-QPVSRSVSTTSHP 268
           +  +  S+G+  P+S S S    P
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKP 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,281
Number of Sequences: 336
Number of extensions: 3656
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)