Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D03
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.7  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    25   4.8  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   8.4  

>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 364 YHSVMITVMKRSILNAMIKLIFYF 293
           YHS++I+++   I N  +K I YF
Sbjct: 215 YHSMIISLLPDGIRNLFLKAISYF 238


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 108 TWITCHIMLCIICKETMYLNLENLII 31
           T +TC + +C+  +ETM L L +LII
Sbjct: 466 TLMTC-LTICLAVRETMPLTLASLII 490


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 497 TKKL*LNGKTVYNXKRHFRDGQAVMIR 417
           TKK+     T  N KR F+DG+ ++ +
Sbjct: 806 TKKMHFRAITTANGKRIFKDGRVIVFQ 832


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,092
Number of Sequences: 5004
Number of extensions: 32384
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)