Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D03
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006619-4|AAY86197.1|  309|Caenorhabditis elegans Hypothetical ...    29   1.4  

>AC006619-4|AAY86197.1|  309|Caenorhabditis elegans Hypothetical
           protein C46C11.4 protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 238 AVFEMVKMLFKCVDYGSQ*NKILILSWHLKYFSSSLLSLHYD 363
           ++FE+     +C+ Y  +   I  + +  K FS   L LH+D
Sbjct: 73  SIFELQSFGIECIQYRKKYQLIATMDYFFKLFSIQQLHLHFD 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,076,107
Number of Sequences: 27780
Number of extensions: 176276
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)