Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D02
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    24   0.96 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   0.96 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   0.96 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   1.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   3.9  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    22   3.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   5.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.0  

>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 445 TRARHLYHHIATHTGRLPF 501
           TR  HL  H+  HTG  P+
Sbjct: 20  TRDHHLKTHMRLHTGERPY 38


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 448 RARHLYHHIATHTGRLPFV 504
           +  HL  H+  HTG  PFV
Sbjct: 328 KTSHLKAHLRWHTGERPFV 346


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 445 TRARHLYHHIATHTGRLPF 501
           TR  HL  H+  HTG  P+
Sbjct: 173 TRDHHLKTHMRLHTGERPY 191


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 442 APNLYLCICVRACLXARRP 386
           A N   C C+R C  A+RP
Sbjct: 184 ASNGNKCCCLRTCSSAKRP 202


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 457 HLYHHIATHTGRLPF 501
           HL +H+  H G  PF
Sbjct: 245 HLEYHLRNHAGSKPF 259


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 457 HLYHHIATHTGRLPF 501
           HL +H+  H G  PF
Sbjct: 3   HLEYHLRNHAGSKPF 17


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 159 CVNDLIKYYYIS 124
           C+N LI YY+IS
Sbjct: 391 CLNTLIFYYHIS 402


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 411 VRASXRGARTXRCI 370
           +R   +GART RC+
Sbjct: 35  LREGLKGARTFRCV 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,033
Number of Sequences: 336
Number of extensions: 2811
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)