Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D02
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    27   3.2  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    27   3.2  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    25   9.7  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   9.7  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    25   9.7  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 104 FYRNGQVNPLCYYLTTFDSFCYKIL 30
           F+R+ Q+ PL  ++ T   FC K L
Sbjct: 838 FWRDPQIEPLIIWIKTVHQFCVKSL 862


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 144 LSHLHKYNYNAVSINL 191
           +S+LH Y YNA++INL
Sbjct: 189 VSNLHGYTYNALNINL 204


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 313 NVYSVSASSQPEATPRSLAPCTFINVINV 227
           N+Y       PE T +S+ PCT + ++ +
Sbjct: 132 NMYHNIRHLDPEKTKKSILPCTPLAIVKI 160


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 80  PLCYYLTTFDSFCYKIL 30
           P+C+ +T + SF Y IL
Sbjct: 367 PICFLITLYSSFVYAIL 383


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +3

Query: 279 SGWLLADTEYTFCWDFPMIFXLTYFINIYSVCIGRCGRRAQRHARTH 419
           +GW      Y F    P+     +    Y+VC+GR  +  +   R H
Sbjct: 191 NGWAFKFGVYDFAGGGPVEVGSGFAALAYTVCLGRRSKFVEEQFRPH 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,331
Number of Sequences: 5004
Number of extensions: 40689
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)