Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D02
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0028 + 242016-242467,242547-242918,243027-243182,245007-24...    29   4.3  
11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-22...    29   4.3  
09_01_0158 + 2332381-2333211                                           28   7.6  
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582...    28   7.6  
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928           28   7.6  

>12_01_0028 +
           242016-242467,242547-242918,243027-243182,245007-245089,
           245159-245222,245704-246001,246616-246726,247059-247100
          Length = 525

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 231 FITLMNVHGASERGVASGWLLADTEYTFC 317
           F+T+  +H +S+ G+   W   D   TFC
Sbjct: 318 FMTISPLHNSSKIGIGGRWFNTDAVITFC 346


>11_01_0029 +
           226459-226973,227053-227424,227533-227688,229513-229595,
           229665-229728,230209-230596
          Length = 525

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 231 FITLMNVHGASERGVASGWLLADTEYTFC 317
           F+T+  +H +S+ G+   W   D   TFC
Sbjct: 339 FMTISPLHNSSKIGIGGRWFNTDAVITFC 367


>09_01_0158 + 2332381-2333211
          Length = 276

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 310 VYSVSASSQPEATPRSLAPCTFINVINV 227
           V ++SA+    A PR LA C ++NVI++
Sbjct: 127 VLNLSANRLSGAIPRDLARCAYLNVIDL 154


>07_03_0369 -
           17356806-17356934,17357145-17357278,17357989-17358247,
           17358322-17358410,17358644-17358794,17358889-17359032,
           17359358-17359477,17359595-17359769,17359842-17360215
          Length = 524

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 262 ASEASPRAGYLRTQNTHFVGIFQ*FFXSR 348
           A +    AGY R  NTH   +F  FF SR
Sbjct: 106 AEDLGHHAGYYRLPNTHDARLFYFFFESR 134


>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
          Length = 244

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 321 DFPMIFXLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTSPTLIP 467
           D+  I  L   + +  +CI  CG  A R+AR  + +Y  G +    + P
Sbjct: 178 DWHKISVLNVMVLVVLICICACGCCAFRNARRSVSEYPYGVNRMHKIHP 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,146,804
Number of Sequences: 37544
Number of extensions: 225798
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)