Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D02
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_19034| Best HMM Match : Metallothio (HMM E-Value=9)                 28   5.9  
SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)               28   7.7  
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)                 28   7.7  
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.7  

>SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 21/75 (28%), Positives = 29/75 (38%)
 Frame = +3

Query: 309 TFCWDFPMIFXLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTSPTLIPSHCDAHR 488
           T C      + L Y  N++S     C +   R+A  H H       T  T   +H     
Sbjct: 7   TLCTQTHAHYALKYTHNMHSNTRTPCPQTHARYALKHTHTVHSNTHTLCTKTHAHYALKH 66

Query: 489 TSSLCTATVKLLLHS 533
           T +LCT T    +HS
Sbjct: 67  THTLCTQTHTHAMHS 81


>SB_19034| Best HMM Match : Metallothio (HMM E-Value=9)
          Length = 228

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 484 CASQCDGISVGLVSAPNLYLCICVRACLXA 395
           CA+QC+ + V L +  N+YLC  +R C+ A
Sbjct: 6   CATQCECVFVPLNA--NVYLCHSMRMCICA 33



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 484 CASQCDGISVGLVSAPNLYLCICVRACLXA 395
           CA+QC+ + V L +  N+YLC  +R C+ A
Sbjct: 32  CATQCECVFVPLNA--NVYLCHSMRMCICA 59



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 484 CASQCDGISVGLVSAPNLYLCICVRACLXA 395
           CA+QC+ + V L +  N+YLC  +R C+ A
Sbjct: 58  CATQCECVFVPLNA--NVYLCHSMRMCICA 85



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 484 CASQCDGISVGLVSAPNLYLCICVRACLXA 395
           CA+QC+ + V L +  N+YLC  +R C+ A
Sbjct: 84  CATQCECVFVPLNA--NVYLCHSMRMCICA 111



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 484 CASQCDGISVGLVSAPNLYLCICVRACLXA 395
           CA+QC+ + V L +  N+YLC  +R C+ A
Sbjct: 110 CATQCECVFVPLNA--NVYLCHSMRMCICA 137



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 484 CASQCDGISVGLVSAPNLYLCICVRACLXA 395
           CA+QC+ + V L +  N+YLC  +R C+ A
Sbjct: 136 CATQCECVFVPLNA--NVYLCHSMRMCICA 163



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 484 CASQCDGISVGLVSAPNLYLCICVRACLXA 395
           CA+QC+ + V L +  N+YLC  +R C+ A
Sbjct: 162 CATQCECVFVPLNA--NVYLCHSMRMCICA 189


>SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
          Length = 431

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 445 TRARHLYHHIATHTGRLPF 501
           +R+ HL  HI THTG  PF
Sbjct: 343 SRSDHLTTHIRTHTGEKPF 361


>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
          Length = 669

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 445 TRARHLYHHIATHTGRLPF 501
           +R+ HL  HI THTG  PF
Sbjct: 581 SRSDHLTTHIRTHTGEKPF 599


>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1704

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 445  TRARHLYHHIATHTGRLPFV 504
            TR+ HL  H+  HTG  P+V
Sbjct: 1164 TRSSHLKTHVLVHTGEKPYV 1183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,401,103
Number of Sequences: 59808
Number of extensions: 303463
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)