Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_D02
(660 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 27 0.12
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 25 0.48
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 24 1.1
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 24 1.1
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 23 2.0
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 23 2.0
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 23 2.0
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 23 2.0
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 23 2.6
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 23 3.4
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 7.9
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 7.9
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 27.5 bits (58), Expect = 0.12
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 484 CASQCDGISVGLVSAPN--LYLCICVRACLXARRP 386
CAS+ GI +PN + +C+C+R C RP
Sbjct: 82 CASKYCGIGKECELSPNSTIAVCVCMRKCPRRHRP 116
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 25.4 bits (53), Expect = 0.48
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 347 REXKNHWKIPTKCVFC 300
R KN +PT+CVFC
Sbjct: 28 RRKKNKKPLPTECVFC 43
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 24.2 bits (50), Expect = 1.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 445 TRARHLYHHIATHTGRLPF 501
TR HL H+ HTG P+
Sbjct: 20 TRDHHLKTHMRLHTGEKPY 38
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 24.2 bits (50), Expect = 1.1
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +3
Query: 300 TEYTFCWDFPMIFXLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTS 452
T +TF + PMI + Y+ I S + ++ + ++ + A+TS
Sbjct: 214 TIFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSNANTS 264
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 132 NNILLSHLHKYNYNAVSIN--LIYSFNRV 212
NN + ++ +KYNYN + N L Y+ N +
Sbjct: 87 NNTIHNNNYKYNYNNNNYNKKLYYNINYI 115
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 132 NNILLSHLHKYNYNAVSIN--LIYSFNRV 212
NN + ++ +KYNYN + N L Y+ N +
Sbjct: 87 NNTIHNNNYKYNYNNNNYNKKLYYNINYI 115
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 132 NNILLSHLHKYNYNAVSIN--LIYSFNRV 212
NN + ++ +KYNYN + N L Y+ N +
Sbjct: 87 NNTIHNNNYKYNYNNNNYNKKLYYNINYI 115
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 132 NNILLSHLHKYNYNAVSIN--LIYSFNRV 212
NN + ++ +KYNYN + N L Y+ N +
Sbjct: 87 NNTIHNNNYKYNYNNNNYNKKLYYNINYI 115
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 23.0 bits (47), Expect = 2.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 449 EPDTYTITLRRTPDVFPLYRYS 514
EP+ T TP FP Y YS
Sbjct: 320 EPNDEVATYDNTPRDFPYYMYS 341
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1
Query: 469 HIATHTGRLPFV 504
H+ THTG P+V
Sbjct: 194 HMRTHTGEKPYV 205
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 22.6 bits (46), Expect = 3.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 457 HLYHHIATHTGRLPFVPLQXNFSYIVK 537
HL +H+ H G PF + ++S + K
Sbjct: 3 HLEYHLRNHFGSKPFKCEKCSYSCVNK 29
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 132 NNILLSHLHKYNYNAVSIN 188
NN + ++ +KYNYN + N
Sbjct: 86 NNTIHNNNYKYNYNNNNYN 104
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 132 NNILLSHLHKYNYNAVSIN 188
NN + ++ +KYNYN + N
Sbjct: 86 NNTIHNNNYKYNYNNNNYN 104
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,238
Number of Sequences: 438
Number of extensions: 3098
Number of successful extensions: 20
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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