Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D01
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)                    32   0.48 
SB_42101| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)           30   1.9  
SB_39821| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=3.1)            30   1.9  
SB_36759| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)           30   1.9  
SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  

>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
          Length = 1328

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 396  RIDKNFNFIQSFRPLLRDQVTKIKHTN 316
            R+D + NF+Q F PLL + + K++H N
Sbjct: 977  RLDLSGNFLQDFPPLLHEAMPKLEHMN 1003


>SB_42101| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)
          Length = 307

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 583 LXXRFIPVPLRCRIFFFNFKCIFLYIF 503
           L  R+I VPL CRI  + F CI + ++
Sbjct: 55  LPYRYIEVPLYCRIVIWRFHCIAISLY 81


>SB_39821| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=3.1)
          Length = 213

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 583 LXXRFIPVPLRCRIFFFNFKCIFLYIF 503
           L  R+I VPL CRI  + F CI + ++
Sbjct: 59  LPYRYIEVPLYCRIVIWRFHCIAISLY 85



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 583 LXXRFIPVPLRCRIFFFNFKCIFLYIF 503
           L  R+I VPL CRI    F CI + ++
Sbjct: 123 LPYRYIEVPLYCRIVILRFYCIAVSLY 149


>SB_36759| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)
          Length = 357

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 583 LXXRFIPVPLRCRIFFFNFKCIFLYIF 503
           L  R+I VPL CRI  + F CI + ++
Sbjct: 59  LPYRYIEVPLYCRIVIWRFHCIAISLY 85



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 583 LXXRFIPVPLRCRIFFFNFKCIFLYIF-CNVYIIWK 479
           L  R+I VPL CRI    F CI + ++ C+  + ++
Sbjct: 315 LPYRYIEVPLYCRIVISMFHCIAVSLYRCSTVLPYR 350


>SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 197 KRNEPFYM*IKGLYDHNYPNINFA*KSYT 283
           +  EPF + +K +Y HN+   NF  +S+T
Sbjct: 320 EHKEPFTVEVKAVYKHNWIKTNFVTESFT 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,949,587
Number of Sequences: 59808
Number of extensions: 273151
Number of successful extensions: 443
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)