Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C24
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)                  29   2.2  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   3.9  
SB_12258| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   9.0  

>SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1157

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 434  ISPQFFFTWHNDPIFVLFLVFESFMSESFKAIK 532
            I P FFFT+    IF+L  +F + +++S+ +++
Sbjct: 922  IGPVFFFTYMITMIFILINMFVAILNDSYDSVR 954


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 162 YFLCYYYVFCHC 127
           Y+ CYYY +C+C
Sbjct: 485 YYYCYYYCYCYC 496


>SB_12258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 120 CFNNDKIRNSNTENKILQIHYMKFEFGNIK 209
           CF + +IR  N  +++ ++HY+     ++K
Sbjct: 13  CFQSSRIRTLNRRSRLFKLHYINLNRRDVK 42


>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 746

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 434 ISPQFFFTWHNDPIFVLFLVFESFMSESFKAIK--VITYSDQYIEIDLHI 577
           I P FF+ +    IF+L  +F S +++SF  +   V   ++ Y  +D  I
Sbjct: 324 IGPTFFYIYTLSMIFILINMFMSIINDSFAEVNSDVSKQANDYEIVDFMI 373


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,478,172
Number of Sequences: 59808
Number of extensions: 277259
Number of successful extensions: 643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)