Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C24
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.4  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 452 FTWHNDPIFVLFLVFESFMSESFKAIKVITYSDQY 556
           +  H  P     +++ +   ESF   K+ITY +Q+
Sbjct: 432 YKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQF 466


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 452 FTWHNDPIFVLFLVFESFMSESFKAIKVITYSDQY 556
           +  H  P     +++ +   ESF   K+ITY +Q+
Sbjct: 432 YKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQF 466


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 121 ALTMTKYVIVTQKIKFYK 174
           A+++ +Y+ VTQ IK+ K
Sbjct: 279 AISIDRYIAVTQPIKYAK 296


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 428 WAISPQFFFTWHNDPIFVLFLV 493
           W   P   FTW    + VLF V
Sbjct: 553 WRFQPWGPFTWGGIGVVVLFAV 574



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 125 KALKCLRFVKNSVNVVSALFLFNQHKSKISKK 30
           + L+CLRF+   ++   A+   N+ K  I  K
Sbjct: 809 QGLECLRFLNEVISDFDAILDQNKFKDIIKIK 840


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,483
Number of Sequences: 438
Number of extensions: 3423
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)