Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C24
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03400.1 68417.m00462 auxin-responsive GH3 family protein sim...    31   0.45 
At5g18770.1 68418.m02230 F-box family protein contains F-box dom...    29   1.8  
At3g23110.1 68416.m02913 disease resistance family protein conta...    28   5.6  
At3g29763.1 68416.m03760 hypothetical protein                          27   9.7  

>At4g03400.1 68417.m00462 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 591

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 491 LKKERKLGHYAM*KKIVGLWPNRKFIIIIIKHA-LPYLTSLQAY 363
           L+ E  LG + +  K   LWPN KFI  I+  + LPYL  L+ Y
Sbjct: 285 LELETNLGWFGLISK---LWPNAKFISSIMTGSMLPYLNKLRHY 325


>At5g18770.1 68418.m02230 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 481

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 488 LVFESFMSESFKAIKVITYSDQYIEIDLHIRSQL 589
           LV+ S +   FK+ K+I+ SD Y+++DL +  +L
Sbjct: 254 LVYMSLIDYQFKSFKIISMSD-YVKVDLDVDFEL 286


>At3g23110.1 68416.m02913 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 835

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 228 FCGYIKFHIFFSFNSKWIL 284
           FCG +  HIF S+  KW++
Sbjct: 802 FCGLVIGHIFTSYKHKWLM 820


>At3g29763.1 68416.m03760 hypothetical protein
          Length = 505

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = -3

Query: 585 WDLMCKSISIY*SEYVITLMALNDSLIKLSNTKKRTKIGSLCHVKKNC 442
           WD     +S +  +  I ++ + +  +     +K+T I +L H K +C
Sbjct: 410 WDAFMAEVSSFSEKTNIGMLKMEEEFVDSRRPRKKTGITNLHHYKVDC 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,942,402
Number of Sequences: 28952
Number of extensions: 200301
Number of successful extensions: 379
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)