Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_C23
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 171 4e-44
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 171 4e-44
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 28 0.79
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 27 1.4
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 26 3.2
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 26 4.2
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 4.2
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 5.6
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 5.6
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 5.6
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 5.6
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 7.3
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 7.3
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 25 9.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 9.7
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 171 bits (417), Expect = 4e-44
Identities = 83/152 (54%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Frame = -1
Query: 498 LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 319
L+EY+V+GRK+P+E+EP P L++MR+F+P+ VAKSR+WYFL+ + K KK TGEIV
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62
Query: 318 XXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 139
K FGIW+RY+SRSG HNMY+E+RD + GAV Y DM ARHRAR SI+I
Sbjct: 63 ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122
Query: 138 IK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR 46
+K VEV K RR VKQ N ++FPLP R
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHR 154
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 171 bits (417), Expect = 4e-44
Identities = 83/152 (54%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Frame = -1
Query: 498 LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 319
L+EY+V+GRK+P+E+EP P L++MR+F+P+ VAKSR+WYFL+ + K KK TGEIV
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62
Query: 318 XXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 139
K FGIW+RY+SRSG HNMY+E+RD + GAV Y DM ARHRAR SI+I
Sbjct: 63 ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122
Query: 138 IK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR 46
+K VEV K RR VKQ N ++FPLP R
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHR 154
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 28.3 bits (60), Expect = 0.79
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = -2
Query: 491 NMRLSAVSSRRRTSPNLPCIK*EFSLRIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQ 312
N+ + +V R S I S ++ P++V S D+ + SRRP + S RKF
Sbjct: 271 NITVESVRGFLRDSSKPDNIMDSPSPKVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFS 330
Query: 311 RK---APSRLRILVSGYAMSL 258
K PS + L G SL
Sbjct: 331 PKLTRTPSLTKSLDPGTPTSL 351
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 1.4
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = -3
Query: 238 VP*IP*PECRWSCHSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIP 59
+P P P + +VLQ++ SS + SNQ +SPST + HH
Sbjct: 68 LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSS 127
Query: 58 IAQTCAPLQET 26
+ +P T
Sbjct: 128 SSYAVSPTSPT 138
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 413 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 285
++ + PN +S IS N R + R LVK L+ + SR RI
Sbjct: 21 KVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRI 63
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 413 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 285
++ + PN +S IS N R + R L+K L+ + SR RI
Sbjct: 21 KVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRI 63
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 495 REYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWY 379
+E V+ + E P +R +SP+ ++ S FWY
Sbjct: 470 QEILVLKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWY 508
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 411 DPIVAKSRFWYFLRQLKKFK 352
D ++ RFWY+L + K F+
Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 388 TRFGDNWIRRENSHFIQGRFGLVLRRELTADN 483
++F DN++ ++ R G+ L REL D+
Sbjct: 3 SQFNDNFVATDDDVGTMARVGMALDRELNGDS 34
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +1
Query: 58 WESDGAVVELFDLWTATRSSLDY 126
WE G V+ + W A S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 199 HSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQH 71
HS R G+ T + + + + SN G + TG T+P H
Sbjct: 99 HSASPRQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAH 141
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 340 TSGLLELLKLSQEIPETRFGDNWIRRENSH 429
TSG L LL E PE+ G+ + R + H
Sbjct: 1274 TSGNLRLLAYDPENPESHSGERLVTRGDFH 1303
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.0 bits (52), Expect = 7.3
Identities = 7/24 (29%), Positives = 12/24 (50%)
Frame = -1
Query: 444 PPLYKMRIFSPDPIVAKSRFWYFL 373
PP + P + K +FWY++
Sbjct: 534 PPKSNAELVDPSTLSGKDKFWYYI 557
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 93 VKQFHNSTIRFPLPKRVHHYKRLN 22
+++F FP K+VHHY+ N
Sbjct: 414 LRKFEIQNANFPSVKKVHHYQYPN 437
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +1
Query: 22 IKSLVVVHTFGQWES---DGAVVELFD--LWTATRSSLD 123
I SLV +H +G W++ A+V F+ W A S D
Sbjct: 281 INSLVAIHDYGAWDTVLMGKAIVSSFENLNWEAMLSMFD 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,353
Number of Sequences: 5004
Number of extensions: 44671
Number of successful extensions: 124
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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