Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_C23
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 164 5e-41
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 162 2e-40
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 142 2e-34
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 29 1.8
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 29 1.8
01_06_0048 + 25951544-25952074 28 4.3
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 28 5.6
11_01_0129 - 1073002-1073073,1073463-1073585,1073667-1073732,107... 27 7.5
05_01_0202 + 1455324-1455349,1457051-1457158,1457321-1457428,145... 27 7.5
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 27 7.5
11_06_0007 - 19171122-19172036 27 9.9
07_03_0033 + 12656255-12656297,12657402-12657408,12657484-126580... 27 9.9
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325... 27 9.9
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 27 9.9
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 27 9.9
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 164 bits (398), Expect = 5e-41
Identities = 71/152 (46%), Positives = 102/152 (67%)
Frame = -1
Query: 501 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 322
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++
Sbjct: 5 RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64
Query: 321 XXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 142
KN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQ
Sbjct: 65 EIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 141 IIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 46
IIK + C+R KQFHNS I+FPL R
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHNSNIKFPLVYR 156
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 162 bits (393), Expect = 2e-40
Identities = 71/152 (46%), Positives = 101/152 (66%)
Frame = -1
Query: 501 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 322
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I+
Sbjct: 5 RFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAIN 64
Query: 321 XXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 142
KN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQ
Sbjct: 65 EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 141 IIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 46
IIK + C+R KQFH S I+FPL R
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHKSDIKFPLVYR 156
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 142 bits (343), Expect = 2e-34
Identities = 70/169 (41%), Positives = 102/169 (60%), Gaps = 17/169 (10%)
Frame = -1
Query: 501 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFL 373
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+F W YFL
Sbjct: 5 RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFL 64
Query: 372 RQLKKFKKTTGEIVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQ 193
R+LKK KK+ G+++ KN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q
Sbjct: 65 RKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQ 124
Query: 192 CYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 46
Y +M +RHR R IQIIK + C+R KQFHN +I+FPL R
Sbjct: 125 MYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYR 173
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 166 QSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 26
Q P S T+YQ SN + Q + HHQ+PI + + T
Sbjct: 950 QCPQSTETNYQRCSNGETESNQPVSQNELEDHHQVPITASSSTNNST 996
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -3
Query: 148 NTDYQSGSNQGCC----VSPSTGQTVPQQHHQIPIAQTCAP 38
N + G N+G P+ QT P+QH Q+PI T P
Sbjct: 406 NNHHHQGGNRGGAHHVGTPPNQQQTKPEQHPQLPIGATKQP 446
>01_06_0048 + 25951544-25952074
Length = 176
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 374 RKYQKRDLATIGSGEKILILYKGGLGSFSDG 466
RKY D + G G L+ GG GS SDG
Sbjct: 24 RKYHSVDSSAAGRGTSNLVRLGGGSGSGSDG 54
>05_07_0028 +
27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 378 NTRNEIWRQLDPERKFSFYTREVWARSPTGA 470
N + WRQ+ F + E W RSPT +
Sbjct: 715 NNMLDTWRQVTKNTMFDEWLNEWWKRSPTSS 745
>11_01_0129 -
1073002-1073073,1073463-1073585,1073667-1073732,
1074227-1074347,1074536-1074603,1074792-1074863,
1076045-1076222,1077554-1077888
Length = 344
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +1
Query: 274 PDTKILNLDGAFLWNFLNRDNFTSGLLELLKLSQEI 381
PD++I+ +DGAF D F +G +E+L+L++E+
Sbjct: 175 PDSRIVYIDGAF-------DLFHAGHVEILRLAREL 203
>05_01_0202 +
1455324-1455349,1457051-1457158,1457321-1457428,
1457885-1457963,1458539-1458556
Length = 112
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -1
Query: 540 CFQIKTPKMKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPD 409
C + +KA G R Y +G P+E +Y + +F+ D
Sbjct: 58 CELMSNGTIKASGGARNYIRLGLSYPNEQYENKAVYSLMVFAAD 101
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 163 SPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHH 68
S + T ++G+N C STGQT P Q H
Sbjct: 561 SATKLATKCENGANVSCDGVGSTGQTPPLQQH 592
>11_06_0007 - 19171122-19172036
Length = 304
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 80 WNCLTCGRRHAAALITSTLIICI 148
W C CG R AA L+ +C+
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCL 274
>07_03_0033 +
12656255-12656297,12657402-12657408,12657484-12658016,
12658106-12658224,12658329-12658688,12659602-12659784
Length = 414
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -3
Query: 133 SGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET*YLR 14
+G N G SP PQ H I+ CA +QE Y R
Sbjct: 364 TGVNVGRQRSPQVTAPSPQVHEPPSISPLCAAIQEPKYTR 403
>06_01_0456 -
3249662-3249710,3249838-3250451,3250694-3250780,
3251509-3252384,3252445-3252534,3252645-3252696,
3253117-3253168,3253265-3253363,3253444-3253528,
3253620-3253668,3253749-3253816,3254417-3254482,
3255690-3255741,3256685-3256767,3256915-3256946,
3257271-3257466,3258542-3258607,3259797-3259869,
3260010-3260224
Length = 967
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 326 IETISPVVFLNFLSCLRKYQKRDLATIGSGEKILILYKGGLGSFSDGSLRPITSYSLNCP 505
+ T+S L R +R AT SG+ + GGLGS S G+L I +++ P
Sbjct: 529 MNTVSQAEDLYAGGASRGNNERGNATSTSGQNSSLPSTGGLGSSSFGTLESILPHNILHP 588
Query: 506 L 508
+
Sbjct: 589 V 589
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 413 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLR 288
++ L PN V+ IS N R + R LVK + K +K SR R
Sbjct: 21 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSR 62
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 413 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLR 288
++ L PN V+ IS N R + R LVK + K +K SR R
Sbjct: 21 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSR 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,342
Number of Sequences: 37544
Number of extensions: 308678
Number of successful extensions: 1009
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -