Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C21
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    32   0.083
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    27   2.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.4  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   4.1  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   5.5  

>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -1

Query: 655 NVNQSHLSYLRNEVDLANYPELSYNALHCS-HARLLSSLSYLANTIHITASDRYMFPHVV 479
           N N+ ++   +N + L  + E+    L C  H      L  + N   + + +RY+F  + 
Sbjct: 46  NTNKHNVYSTKNSMYLLGFEEILNTVLDCEPHIFTDDELRVIENFKALDSDERYLFVRLF 105

Query: 478 VKKRNSYIK 452
           ++KRN + +
Sbjct: 106 MRKRNKWFR 114


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 113 KHIANVHIVWILHSFLVVRFVSVTIEMCELSRDQIF*MRHPRRNS 247
           K I +VH+V ++      RF+ + +E C L     F  +  + NS
Sbjct: 66  KEIRHVHVVELIDCIKAGRFIHLVMEYCSLGDLSYFIRKREKFNS 110


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 337  LEFGHNQPFYYLIIANQSSRYVAQENLSALTVPPRMPHLE 218
            L F   + ++ LI+A +   Y +   LS + +PP  P+LE
Sbjct: 931  LRFYAIKAWFSLILATKEPEYSSIAGLSLVILPPLFPYLE 970


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +3

Query: 708 VVQLSCTPIELRYEESI 758
           + +LSCTP++L+Y ES+
Sbjct: 181 IEKLSCTPLKLKYVESL 197


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 90  YLTSTQLRNILLMCISSGYSIR 155
           +L   + R +L++ ISSGYSIR
Sbjct: 326 FLNPQKARYMLMLAISSGYSIR 347


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 90  YLTSTQLRNILLMCISSGYSIR 155
           +L   + R +L++ ISSGYSIR
Sbjct: 326 FLNPQKARYMLMLAISSGYSIR 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,280
Number of Sequences: 5004
Number of extensions: 64503
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)