Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C21
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0481 + 4229084-4229262,4231083-4231148,4233138-4233255,423...    42   6e-04
01_06_0814 - 32171148-32171303,32171383-32171423,32171645-321716...    38   0.012
06_03_0339 - 19687749-19690805                                         32   0.47 
05_03_0279 - 11547086-11547246,11547591-11547807,11549132-11549275     29   5.8  
01_04_0054 - 15456668-15459691                                         29   5.8  
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912...    28   7.6  

>08_01_0481 +
           4229084-4229262,4231083-4231148,4233138-4233255,
           4233620-4233711,4233805-4233883,4233959-4234052,
           4234296-4234408,4234811-4234856,4235364-4235404,
           4235492-4235647
          Length = 327

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
 Frame = -1

Query: 457 IKYA--VGMICTHKKHKYTGIIRGWDLIW--AADWKEHGEALNRLEFGHNQPFYYLIIAN 290
           +KYA  +G    HK H Y  +I G D +   +  W E     N L  G NQPFY +++  
Sbjct: 194 VKYAFRLGQKVRHKVHGYRAVICGMDHVCCESKSWMETANVEN-LSKGPNQPFYQVLVDV 252

Query: 289 QSS-----RYVAQENLSALTVPPR----MPHLEDLIAREFT 194
            +       YVA+ENL+   +P +     P++E L   E T
Sbjct: 253 YADPELLVAYVAEENLAEAEIPEKGRFDHPYIEFLFFGEDT 293


>01_06_0814 -
           32171148-32171303,32171383-32171423,32171645-32171690,
           32172100-32172212,32172459-32172552,32172628-32172706,
           32172808-32172899,32172973-32173032,32173263-32173409
          Length = 275

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
 Frame = -1

Query: 469 RNSYIKYAVGMICTHKKHKYTGIIRGWDLIW--AADWKEHGEALNRLEFGHNQPFYYLII 296
           +N    + +G    HK H Y  +I G D +   +  W E     N L  G NQPFY +++
Sbjct: 140 QNVEYAFRLGQKVRHKVHGYRAVICGMDPVCCESKSWMETANVEN-LSKGPNQPFYQVLV 198

Query: 295 ANQSS-----RYVAQENLSALTVPPR----MPHLEDLIAREFT 194
              +       YVA+ENL+   +  +     P++E L   E T
Sbjct: 199 DVYADPELLVAYVAEENLAEAEISEKGRFDHPYIEFLFFGEDT 241


>06_03_0339 - 19687749-19690805
          Length = 1018

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -1

Query: 514 TASDRYMFPHVVV----KKRNSYIKYAVGMICTHKKHKYTGIIRGWDLIWAADWKEH 356
           TA +  MF H +     K RNSY  Y        +K +   + +GWD+ W+AD  +H
Sbjct: 567 TAKESSMFSHAIFYEKNKTRNSYEIYP-------RKGEVWALFKGWDIDWSADADKH 616


>05_03_0279 - 11547086-11547246,11547591-11547807,11549132-11549275
          Length = 173

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 345 RASPCSFQSAAQMRSQPRI-IPVYLCFL*VH-IIPTAYLM*LFRFLXXXXGNIYLSDAVM 518
           RA+PC  +S+A +  QP   +  YLCF   H  + TAY       L    G   L   ++
Sbjct: 7   RATPCPTESSAPVHGQPESQLLYYLCFNKQHGHVKTAYFQGKVALL-LQVGREALPPDIV 65

Query: 519 WMVLAKYDRDD 551
             ++A  DR +
Sbjct: 66  AKIIAARDRKE 76


>01_04_0054 - 15456668-15459691
          Length = 1007

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -1

Query: 517 ITASDRYMFPHVVV----KKRNSYIKYAVGMICTHKKHKYTGIIRGWDLIWAADWKEH 356
           + + D  MF H+V     +KR+SY  Y        +K +   + +GW + W++D  +H
Sbjct: 578 VVSQDALMFSHIVSWVKGRKRSSYEIYP-------RKGEVWALYKGWSMQWSSDADKH 628


>03_05_1139 -
           30689514-30689609,30689795-30689956,30691245-30691299,
           30691695-30691959,30692749-30692959,30693542-30693721,
           30693802-30693899,30694211-30694277,30694897-30694963,
           30695335-30695447,30695988-30696032,30696116-30696223,
           30696582-30696791,30697464-30697670,30697786-30697875,
           30698168-30698389
          Length = 731

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 475 KKRNSYIKYAVGMICTHKKHKYTGIIRGWDL 383
           +K+ SYI++A+     HK   +  I+R WD+
Sbjct: 493 EKKQSYIRHAIREYNIHKTLVHPNIVRLWDI 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,107,026
Number of Sequences: 37544
Number of extensions: 393725
Number of successful extensions: 976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)